diff --git a/.flake8 b/.flake8 index 7a3af99..e6f7873 100644 --- a/.flake8 +++ b/.flake8 @@ -41,6 +41,7 @@ per-file-ignores = src/tests/*:S101,ANN,DAR100,D100,D103,DAR101,DAR103 src/xpypact/Inventory.py:F811 src/xpypact/data_arrays.py:ANN401 + src/xpypact/utils/resource.py:ANN202 ignore-decorators=click,pytest docstring-convention = google rst-roles = class,const,func,meth,mod,ref diff --git a/.github/workflows/combine-prs.yml b/.github/workflows/combine-prs.yml index 06ee929..e9efd62 100644 --- a/.github/workflows/combine-prs.yml +++ b/.github/workflows/combine-prs.yml @@ -1,9 +1,11 @@ name: 'Combine PRs' + # # Source: # https://dev.to/denvercoder1/keeping-your-dependencies-updated-automatically-with-dependabot-299g # https://github.com/hrvey/combine-prs-workflow/blob/master/combine-prs.yml # + # Controls when the action will run - in this case triggered manually on: workflow_dispatch: @@ -35,8 +37,8 @@ jobs: # Steps represent a sequence of tasks that will be executed as part of the job steps: - uses: actions/github-script@v6 - id: fetch-branch-names - name: Fetch branch names + id: create-combined-pr + name: Create Combined PR with: github-token: ${{secrets.GITHUB_TOKEN}} script: | @@ -44,29 +46,27 @@ jobs: owner: context.repo.owner, repo: context.repo.repo }); - branches = []; - prs = []; - base_branch = null; + let branchesAndPRStrings = []; + let baseBranch = null; + let baseBranchSHA = null; for (const pull of pulls) { const branch = pull['head']['ref']; console.log('Pull for branch: ' + branch); if (branch.startsWith('${{ github.event.inputs.branchPrefix }}')) { - console.log('Branch matched: ' + branch); - statusOK = true; + console.log('Branch matched prefix: ' + branch); + let statusOK = true; if(${{ github.event.inputs.mustBeGreen }}) { console.log('Checking green status: ' + branch); - const statuses = await github.paginate('GET /repos/{owner}/{repo}/commits/{ref}/status', { + const statusResponse = await github.rest.repos.getCombinedStatusForRef({ owner: context.repo.owner, repo: context.repo.repo, ref: branch }); - if(statuses.length > 0) { - const latest_status = statuses[0]['state']; - console.log('Validating status: ' + latest_status); - if(latest_status != 'success') { - console.log('Discarding ' + branch + ' with status ' + latest_status); - statusOK = false; - } + const state = statusResponse['data']['state']; + console.log('Validating status: ' + state); + if(state != 'success') { + console.log('Discarding ' + branch + ' with status ' + state); + statusOK = false; } } console.log('Checking labels: ' + branch); @@ -81,65 +81,62 @@ jobs: } if (statusOK) { console.log('Adding branch to array: ' + branch); - branches.push(branch); - prs.push('#' + pull['number'] + ' ' + pull['title']); - base_branch = pull['base']['ref']; + const prString = '#' + pull['number'] + ' ' + pull['title']; + branchesAndPRStrings.push({ branch, prString }); + baseBranch = pull['base']['ref']; + baseBranchSHA = pull['base']['sha']; } + } else { + console.log('Branch didn't match prefix: ' + branch); } } - - if (branches.length == 0) { + if (branchesAndPRStrings.length == 0) { core.setFailed('No PRs/branches matched criteria'); return; } + try { + await github.rest.git.createRef({ + owner: context.repo.owner, + repo: context.repo.repo, + ref: 'refs/heads/' + '${{ github.event.inputs.combineBranchName }}', + sha: baseBranchSHA + }); + } catch (error) { + console.log(error); + core.setFailed('Failed to create combined branch - maybe a branch by that name already exists?'); + return; + } - core.setOutput('base-branch', base_branch); - core.setOutput('prs-string', prs.join('\n')); - - combined = branches.join(' ') - console.log('Combined: ' + combined); - return combined - # Checks-out your repository under $GITHUB_WORKSPACE, so your job can access it - - uses: actions/checkout@v3.0.2 - with: - fetch-depth: 0 - # Creates a branch with other PR branches merged together - - name: Created combined branch - env: - BASE_BRANCH: ${{ steps.fetch-branch-names.outputs.base-branch }} - BRANCHES_TO_COMBINE: ${{ steps.fetch-branch-names.outputs.result }} - COMBINE_BRANCH_NAME: ${{ github.event.inputs.combineBranchName }} - run: | - echo "$BRANCHES_TO_COMBINE" - sourcebranches="${BRANCHES_TO_COMBINE%\"}" - sourcebranches="${sourcebranches#\"}" - - basebranch="${BASE_BRANCH%\"}" - basebranch="${basebranch#\"}" - - git config pull.rebase false - git config user.name github-actions - git config user.email github-actions@github.com + let combinedPRs = []; + let mergeFailedPRs = []; + for(const { branch, prString } of branchesAndPRStrings) { + try { + await github.rest.repos.merge({ + owner: context.repo.owner, + repo: context.repo.repo, + base: '${{ github.event.inputs.combineBranchName }}', + head: branch, + }); + console.log('Merged branch ' + branch); + combinedPRs.push(prString); + } catch (error) { + console.log('Failed to merge branch ' + branch); + mergeFailedPRs.push(prString); + } + } - git branch $COMBINE_BRANCH_NAME $basebranch - git checkout $COMBINE_BRANCH_NAME - git pull origin $sourcebranches --no-edit - git push origin $COMBINE_BRANCH_NAME - # Creates a PR with the new combined branch - - uses: actions/github-script@v6 - name: Create Combined Pull Request - env: - PRS_STRING: ${{ steps.fetch-branch-names.outputs.prs-string }} - with: - github-token: ${{secrets.GITHUB_TOKEN}} - script: | - const prString = process.env.PRS_STRING; - const body = 'This PR was created by the Combine PRs action by combining the following PRs:\n' + prString; - await github.pulls.create({ + console.log('Creating combined PR'); + const combinedPRsString = combinedPRs.join('\n'); + let body = '✅ This PR was created by the Combine PRs action by combining the following PRs:\n' + combinedPRsString; + if(mergeFailedPRs.length > 0) { + const mergeFailedPRsString = mergeFailedPRs.join('\n'); + body += '\n\n⚠️ The following PRs were left out due to merge conflicts:\n' + mergeFailedPRsString + } + await github.rest.pulls.create({ owner: context.repo.owner, repo: context.repo.repo, title: 'Combined PR', head: '${{ github.event.inputs.combineBranchName }}', - base: '${{ steps.fetch-branch-names.outputs.base-branch }}', + base: baseBranch, body: body }); diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index 0015eee..072db55 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -78,7 +78,7 @@ repos: types: [python] - id: flake8 name: flake8 - entry: poetry run flake8 src + entry: poetry run flake8 language: system types: [python] # Also code format the docs diff --git a/noxfile.py b/noxfile.py index bc31912..e36f35c 100644 --- a/noxfile.py +++ b/noxfile.py @@ -4,6 +4,7 @@ """ from typing import Final, List +import re import shutil import sys @@ -32,7 +33,37 @@ "docs-build", ) -package: Final = "xpypact" + +NAME_RGX = re.compile(r'name\s*=\s*"(?P[_a-zA-Z]*")') + + +def find_my_name() -> str: + """Find this package name. + + Search the first row in pyproject.toml in format + + name = "" + + and returns the value. + This allows to reuse the noxfile.py in similar projects + without any changes. + + Returns: + str: Current package found in pyproject.toml + + Raises: + ValueError: if the pattern is not found. + """ + with Path("pyproject.toml").open() as fid: + for line in fid: + res = NAME_RGX.match(line) + if res is not None: + return res["package"].replace("-", "_") + msg = "Cannot find package name" + raise ValueError(msg) + + +package: Final = find_my_name() locations: Final = f"src/{package}", "src/tests", "noxfile.py", "docs/source/conf.py" supported_pythons: Final = "3.8", "3.9", "3.10", "3.11" diff --git a/poetry.lock b/poetry.lock index 692d71b..e68f4c6 100644 --- a/poetry.lock +++ b/poetry.lock @@ -15,7 +15,7 @@ optional = false python-versions = ">=3.6" [package.extras] -test = ["coverage", "flake8", "pexpect", "wheel"] +test = ["wheel", "pexpect", "flake8", "coverage"] [[package]] name = "attrs" @@ -26,13 +26,13 @@ optional = false python-versions = ">=3.5" [package.extras] -dev = ["cloudpickle", "coverage[toml] (>=5.0.2)", "furo", "hypothesis", "mypy (>=0.900,!=0.940)", "pre-commit", "pympler", "pytest (>=4.3.0)", "pytest-mypy-plugins", "sphinx", "sphinx-notfound-page", "zope.interface"] -docs = ["furo", "sphinx", "sphinx-notfound-page", "zope.interface"] -tests = ["cloudpickle", "coverage[toml] (>=5.0.2)", "hypothesis", "mypy (>=0.900,!=0.940)", "pympler", "pytest (>=4.3.0)", "pytest-mypy-plugins", "zope.interface"] -tests_no_zope = ["cloudpickle", "coverage[toml] (>=5.0.2)", "hypothesis", "mypy (>=0.900,!=0.940)", "pympler", "pytest (>=4.3.0)", "pytest-mypy-plugins"] +dev = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "mypy (>=0.900,!=0.940)", "pytest-mypy-plugins", "zope.interface", "furo", "sphinx", "sphinx-notfound-page", "pre-commit", "cloudpickle"] +docs = ["furo", "sphinx", "zope.interface", "sphinx-notfound-page"] +tests = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "mypy (>=0.900,!=0.940)", "pytest-mypy-plugins", "zope.interface", "cloudpickle"] +tests_no_zope = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "mypy (>=0.900,!=0.940)", "pytest-mypy-plugins", "cloudpickle"] [[package]] -name = "Babel" +name = "babel" version = "2.10.3" description = "Internationalization utilities" category = "dev" @@ -57,9 +57,9 @@ PyYAML = ">=5.3.1" stevedore = ">=1.20.0" [package.extras] -test = ["beautifulsoup4 (>=4.8.0)", "coverage (>=4.5.4)", "fixtures (>=3.0.0)", "flake8 (>=4.0.0)", "pylint (==1.9.4)", "stestr (>=2.5.0)", "testscenarios (>=0.5.0)", "testtools (>=2.3.0)", "toml"] +test = ["coverage (>=4.5.4)", "fixtures (>=3.0.0)", "flake8 (>=4.0.0)", "stestr (>=2.5.0)", "testscenarios (>=0.5.0)", "testtools (>=2.3.0)", "toml", "beautifulsoup4 (>=4.8.0)", "pylint (==1.9.4)"] toml = ["toml"] -yaml = ["PyYAML"] +yaml = ["pyyaml"] [[package]] name = "black" @@ -217,8 +217,8 @@ packaging = "*" toml = "*" [package.extras] -conda = ["pyyaml"] pipenv = ["pipenv"] +conda = ["pyyaml"] [[package]] name = "et-xmlfile" @@ -248,8 +248,8 @@ optional = false python-versions = ">=3.7" [package.extras] -docs = ["furo (>=2022.6.21)", "sphinx (>=5.1.1)", "sphinx-autodoc-typehints (>=1.19.1)"] -testing = ["covdefaults (>=2.2)", "coverage (>=6.4.2)", "pytest (>=7.1.2)", "pytest-cov (>=3)", "pytest-timeout (>=2.1)"] +testing = ["pytest-timeout (>=2.1)", "pytest-cov (>=3)", "pytest (>=7.1.2)", "coverage (>=6.4.2)", "covdefaults (>=2.2)"] +docs = ["sphinx-autodoc-typehints (>=1.19.1)", "sphinx (>=5.1.1)", "furo (>=2022.6.21)"] [[package]] name = "flake8" @@ -315,7 +315,7 @@ python-versions = "*" flake8 = "*" [package.extras] -test = ["coverage", "coveralls", "mock", "pytest", "pytest-cov"] +test = ["pytest-cov", "pytest", "mock", "coveralls", "coverage"] [[package]] name = "flake8-colors" @@ -372,7 +372,6 @@ python-versions = "*" [package.dependencies] pycodestyle = "*" -setuptools = "*" [[package]] name = "flake8-print" @@ -411,9 +410,9 @@ python-versions = ">=3.6" flake8 = ">=3" [package.extras] -ci = ["coverage (>=4.0.0,<5.0.0)", "coveralls", "flake8-builtins", "flake8-commas", "flake8-fixme", "flake8-print", "flake8-quotes", "flake8-todo", "pytest (>=4)", "pytest-cov (>=2)"] -dev = ["coverage (>=4.0.0,<5.0.0)", "flake8-builtins", "flake8-commas", "flake8-fixme", "flake8-print", "flake8-quotes", "flake8-todo", "pytest (>=4)", "pytest-cov (>=2)"] -test = ["coverage (>=4.0.0,<5.0.0)", "flake8-builtins", "flake8-commas", "flake8-fixme", "flake8-print", "flake8-quotes", "flake8-todo", "pytest (>=4)", "pytest-cov (>=2)"] +ci = ["coverage (>=4.0.0,<5.0.0)", "pytest (>=4)", "pytest-cov (>=2)", "flake8-builtins", "flake8-commas", "flake8-fixme", "flake8-print", "flake8-quotes", "flake8-todo", "coveralls"] +dev = ["coverage (>=4.0.0,<5.0.0)", "pytest (>=4)", "pytest-cov (>=2)", "flake8-builtins", "flake8-commas", "flake8-fixme", "flake8-print", "flake8-quotes", "flake8-todo"] +test = ["coverage (>=4.0.0,<5.0.0)", "pytest (>=4)", "pytest-cov (>=2)", "flake8-builtins", "flake8-commas", "flake8-fixme", "flake8-print", "flake8-quotes", "flake8-todo"] [[package]] name = "gitdb" @@ -427,7 +426,7 @@ python-versions = ">=3.6" smmap = ">=3.0.1,<6" [[package]] -name = "GitPython" +name = "gitpython" version = "3.1.27" description = "GitPython is a python library used to interact with Git repositories" category = "dev" @@ -499,9 +498,9 @@ python-versions = ">=3.7" zipp = ">=0.5" [package.extras] -docs = ["jaraco.packaging (>=9)", "rst.linker (>=1.9)", "sphinx"] +docs = ["sphinx", "jaraco.packaging (>=9)", "rst.linker (>=1.9)"] perf = ["ipython"] -testing = ["flufl.flake8", "importlib-resources (>=1.3)", "packaging", "pyfakefs", "pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=1.3)", "pytest-flake8", "pytest-mypy (>=0.9.1)", "pytest-perf (>=0.9.2)"] +testing = ["pytest (>=6)", "pytest-checkdocs (>=2.4)", "pytest-flake8", "pytest-cov", "pytest-enabler (>=1.3)", "packaging", "pyfakefs", "flufl.flake8", "pytest-perf (>=0.9.2)", "pytest-black (>=0.3.7)", "pytest-mypy (>=0.9.1)", "importlib-resources (>=1.3)"] [[package]] name = "iniconfig" @@ -520,13 +519,13 @@ optional = false python-versions = ">=3.6.1,<4.0" [package.extras] -colors = ["colorama (>=0.4.3,<0.5.0)"] pipfile_deprecated_finder = ["pipreqs", "requirementslib"] +requirements_deprecated_finder = ["pipreqs", "pip-api"] +colors = ["colorama (>=0.4.3,<0.5.0)"] plugins = ["setuptools"] -requirements_deprecated_finder = ["pip-api", "pipreqs"] [[package]] -name = "Jinja2" +name = "jinja2" version = "3.1.2" description = "A very fast and expressive template engine." category = "dev" @@ -553,7 +552,7 @@ typing-extensions = ">=3.7.4.2" typing-inspect = ">=0.4.0" [package.extras] -dev = ["black (==22.3.0)", "coverage (>=4.5.4)", "fixit (==0.1.1)", "flake8 (>=3.7.8)", "hypothesis (>=4.36.0)", "hypothesmith (>=0.0.4)", "jinja2 (==3.0.3)", "jupyter (>=1.0.0)", "maturin (>=0.8.3,<0.9)", "nbsphinx (>=0.4.2)", "prompt-toolkit (>=2.0.9)", "pyre-check (==0.9.9)", "setuptools-rust (>=0.12.1)", "setuptools-scm (>=6.0.1)", "slotscheck (>=0.7.1)", "sphinx-rtd-theme (>=0.4.3)", "ufmt (==1.3)", "usort (==1.0.0rc1)"] +dev = ["black (==22.3.0)", "coverage (>=4.5.4)", "fixit (==0.1.1)", "flake8 (>=3.7.8)", "hypothesis (>=4.36.0)", "hypothesmith (>=0.0.4)", "jupyter (>=1.0.0)", "maturin (>=0.8.3,<0.9)", "nbsphinx (>=0.4.2)", "prompt-toolkit (>=2.0.9)", "setuptools-scm (>=6.0.1)", "sphinx-rtd-theme (>=0.4.3)", "ufmt (==1.3)", "usort (==1.0.0rc1)", "setuptools-rust (>=0.12.1)", "slotscheck (>=0.7.1)", "jinja2 (==3.0.3)", "pyre-check (==0.9.9)"] [[package]] name = "livereload" @@ -568,7 +567,7 @@ six = "*" tornado = {version = "*", markers = "python_version > \"2.7\""} [[package]] -name = "MarkupSafe" +name = "markupsafe" version = "2.1.1" description = "Safely add untrusted strings to HTML/XML markup." category = "dev" @@ -642,9 +641,6 @@ category = "dev" optional = false python-versions = ">=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,!=3.5.*,!=3.6.*" -[package.dependencies] -setuptools = "*" - [[package]] name = "nox" version = "2022.8.7" @@ -771,8 +767,8 @@ optional = false python-versions = ">=3.7" [package.extras] -docs = ["furo (>=2021.7.5b38)", "proselint (>=0.10.2)", "sphinx (>=4)", "sphinx-autodoc-typehints (>=1.12)"] -test = ["appdirs (==1.4.4)", "pytest (>=6)", "pytest-cov (>=2.7)", "pytest-mock (>=3.6)"] +docs = ["furo (>=2021.7.5b38)", "proselint (>=0.10.2)", "sphinx-autodoc-typehints (>=1.12)", "sphinx (>=4)"] +test = ["appdirs (==1.4.4)", "pytest-cov (>=2.7)", "pytest-mock (>=3.6)", "pytest (>=6)"] [[package]] name = "pluggy" @@ -890,7 +886,7 @@ optional = false python-versions = ">=3.6" [[package]] -name = "Pygments" +name = "pygments" version = "2.13.0" description = "Pygments is a syntax highlighting package written in Python." category = "dev" @@ -909,7 +905,7 @@ optional = false python-versions = ">=3.6.8" [package.extras] -diagrams = ["jinja2", "railroad-diagrams"] +diagrams = ["railroad-diagrams", "jinja2"] [[package]] name = "pytest" @@ -973,7 +969,7 @@ coverage = {version = ">=5.2.1", extras = ["toml"]} pytest = ">=4.6" [package.extras] -testing = ["fields", "hunter", "process-tests", "pytest-xdist", "six", "virtualenv"] +testing = ["fields", "hunter", "process-tests", "six", "pytest-xdist", "virtualenv"] [[package]] name = "pytest-mock" @@ -987,7 +983,7 @@ python-versions = ">=3.7" pytest = ">=5.0" [package.extras] -dev = ["pre-commit", "pytest-asyncio", "tox"] +dev = ["pytest-asyncio", "tox", "pre-commit"] [[package]] name = "python-dateutil" @@ -1009,7 +1005,7 @@ optional = false python-versions = "*" [[package]] -name = "PyYAML" +name = "pyyaml" version = "6.0" description = "YAML parser and emitter for Python" category = "dev" @@ -1077,10 +1073,10 @@ typer = {version = ">=0.4.1,<0.7", extras = ["all"]} types-docutils = ">=0.18,<0.19" [package.extras] -docs = ["m2r2 (>=0.3.2)", "sphinx", "sphinx-autobuild (==2021.3.14)", "sphinx-click (>=4.0.3,<5.0.0)", "sphinx-rtd-dark-mode (>=1.2.4,<2.0.0)", "sphinx-rtd-theme (<1)", "sphinxcontrib-spelling (>=7.3)"] sphinx = ["sphinx"] -testing = ["coverage-conditional-plugin (>=0.5)", "coverage[toml] (>=6.0)", "pytest (>=6.0)", "pytest-cov (>=3.0)", "pytest-randomly (>=3.0)", "pytest-sugar (>=0.9.5)"] +docs = ["sphinx", "sphinx-autobuild (==2021.3.14)", "m2r2 (>=0.3.2)", "sphinx-rtd-theme (<1)", "sphinx-rtd-dark-mode (>=1.2.4,<2.0.0)", "sphinxcontrib-spelling (>=7.3)", "sphinx-click (>=4.0.3,<5.0.0)"] toml = ["tomli"] +testing = ["pytest (>=6.0)", "pytest-cov (>=3.0)", "coverage[toml] (>=6.0)", "coverage-conditional-plugin (>=0.5)", "pytest-sugar (>=0.9.5)", "pytest-randomly (>=3.0)"] [[package]] name = "rstcheck-core" @@ -1096,10 +1092,10 @@ pydantic = ">=1.2,<2.0" types-docutils = ">=0.18,<0.19" [package.extras] -docs = ["m2r2 (>=0.3.2)", "sphinx (>=4.0,<6.0)", "sphinx-autobuild (==2021.3.14)", "sphinx-autodoc-typehints (>=1.15)", "sphinx-rtd-dark-mode (>=1.2.4,<2.0.0)", "sphinx-rtd-theme (<1)", "sphinxcontrib-apidoc (>=0.3)", "sphinxcontrib-spelling (>=7.3)"] sphinx = ["sphinx (>=4.0,<6.0)"] -testing = ["coverage-conditional-plugin (>=0.5)", "coverage[toml] (>=6.0)", "mock (>=4.0)", "pytest (>=6.0)", "pytest-cov (>=3.0)", "pytest-mock (>=3.7)", "pytest-randomly (>=3.0)"] +docs = ["sphinx (>=4.0,<6.0)", "sphinx-autobuild (==2021.3.14)", "m2r2 (>=0.3.2)", "sphinx-rtd-theme (<1)", "sphinx-rtd-dark-mode (>=1.2.4,<2.0.0)", "sphinx-autodoc-typehints (>=1.15)", "sphinxcontrib-apidoc (>=0.3)", "sphinxcontrib-spelling (>=7.3)"] toml = ["tomli (>=2.0,<3.0)"] +testing = ["pytest (>=6.0)", "pytest-cov (>=3.0)", "coverage[toml] (>=6.0)", "coverage-conditional-plugin (>=0.5)", "pytest-randomly (>=3.0)", "pytest-mock (>=3.7)", "mock (>=4.0)"] [[package]] name = "ruamel.yaml" @@ -1138,20 +1134,6 @@ dparse = ">=0.5.1" packaging = ">=21.0" requests = "*" "ruamel.yaml" = ">=0.17.21" -setuptools = ">=19.3" - -[[package]] -name = "setuptools" -version = "65.3.0" -description = "Easily download, build, install, upgrade, and uninstall Python packages" -category = "dev" -optional = false -python-versions = ">=3.7" - -[package.extras] -docs = ["furo", "jaraco.packaging (>=9)", "jaraco.tidelift (>=1.4)", "pygments-github-lexers (==0.0.5)", "rst.linker (>=1.9)", "sphinx", "sphinx-favicon", "sphinx-hoverxref (<2)", "sphinx-inline-tabs", "sphinx-notfound-page (==0.8.3)", "sphinx-reredirects", "sphinxcontrib-towncrier"] -testing = ["build[virtualenv]", "filelock (>=3.4.0)", "flake8 (<5)", "flake8-2020", "ini2toml[lite] (>=0.9)", "jaraco.envs (>=2.2)", "jaraco.path (>=3.2.0)", "mock", "pip (>=19.1)", "pip-run (>=8.8)", "pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=1.3)", "pytest-flake8", "pytest-mypy (>=0.9.1)", "pytest-perf", "pytest-xdist", "tomli-w (>=1.0.0)", "virtualenv (>=13.0.0)", "wheel"] -testing-integration = ["build[virtualenv]", "filelock (>=3.4.0)", "jaraco.envs (>=2.2)", "jaraco.path (>=3.2.0)", "pytest", "pytest-enabler", "pytest-xdist", "tomli", "virtualenv (>=13.0.0)", "wheel"] [[package]] name = "shellingham" @@ -1186,7 +1168,7 @@ optional = false python-versions = "*" [[package]] -name = "Sphinx" +name = "sphinx" version = "5.1.1" description = "Python documentation generator" category = "dev" @@ -1214,8 +1196,8 @@ sphinxcontrib-serializinghtml = ">=1.1.5" [package.extras] docs = ["sphinxcontrib-websupport"] -lint = ["docutils-stubs", "flake8 (>=3.5.0)", "flake8-bugbear", "flake8-comprehensions", "isort", "mypy (>=0.971)", "sphinx-lint", "types-requests", "types-typed-ast"] -test = ["cython", "html5lib", "pytest (>=4.6)", "typed-ast"] +lint = ["flake8 (>=3.5.0)", "flake8-comprehensions", "flake8-bugbear", "isort", "mypy (>=0.971)", "sphinx-lint", "docutils-stubs", "types-typed-ast", "types-requests"] +test = ["pytest (>=4.6)", "html5lib", "cython", "typed-ast"] [[package]] name = "sphinx-autobuild" @@ -1245,8 +1227,8 @@ python-versions = ">=3.7" Sphinx = ">=5.1.1" [package.extras] -testing = ["covdefaults (>=2.2)", "coverage (>=6.4.2)", "diff-cover (>=6.5.1)", "nptyping (>=2.2)", "pytest (>=7.1.2)", "pytest-cov (>=3)", "sphobjinv (>=2.2.2)", "typing-extensions (>=4.3)"] type_comments = ["typed-ast (>=1.5.4)"] +testing = ["typing-extensions (>=4.3)", "sphobjinv (>=2.2.2)", "pytest-cov (>=3)", "pytest (>=7.1.2)", "nptyping (>=2.2)", "diff-cover (>=6.5.1)", "coverage (>=6.4.2)", "covdefaults (>=2.2)"] [[package]] name = "sphinx-autorun" @@ -1285,7 +1267,7 @@ docutils = "<0.18" sphinx = ">=1.6" [package.extras] -dev = ["bump2version", "sphinxcontrib-httpdomain", "transifex-client"] +dev = ["transifex-client", "sphinxcontrib-httpdomain", "bump2version"] [[package]] name = "sphinxcontrib-applehelp" @@ -1296,7 +1278,7 @@ optional = false python-versions = ">=3.5" [package.extras] -lint = ["docutils-stubs", "flake8", "mypy"] +lint = ["flake8", "mypy", "docutils-stubs"] test = ["pytest"] [[package]] @@ -1308,7 +1290,7 @@ optional = false python-versions = ">=3.5" [package.extras] -lint = ["docutils-stubs", "flake8", "mypy"] +lint = ["flake8", "mypy", "docutils-stubs"] test = ["pytest"] [[package]] @@ -1320,8 +1302,8 @@ optional = false python-versions = ">=3.6" [package.extras] -lint = ["docutils-stubs", "flake8", "mypy"] -test = ["html5lib", "pytest"] +lint = ["flake8", "mypy", "docutils-stubs"] +test = ["pytest", "html5lib"] [[package]] name = "sphinxcontrib-jsmath" @@ -1332,7 +1314,7 @@ optional = false python-versions = ">=3.5" [package.extras] -test = ["flake8", "mypy", "pytest"] +test = ["pytest", "flake8", "mypy"] [[package]] name = "sphinxcontrib-napoleon" @@ -1355,7 +1337,7 @@ optional = false python-versions = ">=3.5" [package.extras] -lint = ["docutils-stubs", "flake8", "mypy"] +lint = ["flake8", "mypy", "docutils-stubs"] test = ["pytest"] [[package]] @@ -1367,7 +1349,7 @@ optional = false python-versions = ">=3.5" [package.extras] -lint = ["docutils-stubs", "flake8", "mypy"] +lint = ["flake8", "mypy", "docutils-stubs"] test = ["pytest"] [[package]] @@ -1435,8 +1417,8 @@ optional = false python-versions = ">=3.5.3" [package.extras] -doc = ["sphinx-autodoc-typehints (>=1.2.0)", "sphinx-rtd-theme"] -test = ["mypy", "pytest", "typing-extensions"] +doc = ["sphinx-rtd-theme", "sphinx-autodoc-typehints (>=1.2.0)"] +test = ["pytest", "typing-extensions", "mypy"] [[package]] name = "typer" @@ -1453,10 +1435,10 @@ rich = {version = ">=10.11.0,<13.0.0", optional = true, markers = "extra == \"al shellingham = {version = ">=1.3.0,<2.0.0", optional = true, markers = "extra == \"all\""} [package.extras] -all = ["colorama (>=0.4.3,<0.5.0)", "rich (>=10.11.0,<13.0.0)", "shellingham (>=1.3.0,<2.0.0)"] -dev = ["autoflake (>=1.3.1,<2.0.0)", "flake8 (>=3.8.3,<4.0.0)", "pre-commit (>=2.17.0,<3.0.0)"] -doc = ["mdx-include (>=1.4.1,<2.0.0)", "mkdocs (>=1.1.2,<2.0.0)", "mkdocs-material (>=8.1.4,<9.0.0)"] -test = ["black (>=22.3.0,<23.0.0)", "coverage (>=5.2,<6.0)", "isort (>=5.0.6,<6.0.0)", "mypy (==0.910)", "pytest (>=4.4.0,<5.4.0)", "pytest-cov (>=2.10.0,<3.0.0)", "pytest-sugar (>=0.9.4,<0.10.0)", "pytest-xdist (>=1.32.0,<2.0.0)", "rich (>=10.11.0,<13.0.0)", "shellingham (>=1.3.0,<2.0.0)"] +test = ["rich (>=10.11.0,<13.0.0)", "isort (>=5.0.6,<6.0.0)", "black (>=22.3.0,<23.0.0)", "mypy (==0.910)", "pytest-sugar (>=0.9.4,<0.10.0)", "pytest-xdist (>=1.32.0,<2.0.0)", "coverage (>=5.2,<6.0)", "pytest-cov (>=2.10.0,<3.0.0)", "pytest (>=4.4.0,<5.4.0)", "shellingham (>=1.3.0,<2.0.0)"] +doc = ["mdx-include (>=1.4.1,<2.0.0)", "mkdocs-material (>=8.1.4,<9.0.0)", "mkdocs (>=1.1.2,<2.0.0)"] +dev = ["pre-commit (>=2.17.0,<3.0.0)", "flake8 (>=3.8.3,<4.0.0)", "autoflake (>=1.3.1,<2.0.0)"] +all = ["rich (>=10.11.0,<13.0.0)", "shellingham (>=1.3.0,<2.0.0)", "colorama (>=0.4.3,<0.5.0)"] [[package]] name = "types-docutils" @@ -1503,8 +1485,8 @@ optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*, <4" [package.extras] -brotli = ["brotli (>=1.0.9)", "brotlicffi (>=0.8.0)", "brotlipy (>=0.6.0)"] -secure = ["certifi", "cryptography (>=1.3.4)", "idna (>=2.0.0)", "ipaddress", "pyOpenSSL (>=0.14)", "urllib3-secure-extra"] +brotli = ["brotlicffi (>=0.8.0)", "brotli (>=1.0.9)", "brotlipy (>=0.6.0)"] +secure = ["pyOpenSSL (>=0.14)", "cryptography (>=1.3.4)", "idna (>=2.0.0)", "certifi", "urllib3-secure-extra", "ipaddress"] socks = ["PySocks (>=1.5.6,!=1.5.7,<2.0)"] [[package]] @@ -1538,12 +1520,12 @@ packaging = ">=20.0" pandas = ">=1.2" [package.extras] -accel = ["bottleneck", "flox", "numbagg", "scipy"] -complete = ["bottleneck", "cfgrib", "cftime", "dask[complete]", "flox", "fsspec", "h5netcdf", "matplotlib", "nc-time-axis", "netCDF4", "numbagg", "pooch", "pydap", "rasterio", "scipy", "seaborn", "zarr"] -docs = ["bottleneck", "cfgrib", "cftime", "dask[complete]", "flox", "fsspec", "h5netcdf", "ipykernel", "ipython", "jupyter-client", "matplotlib", "nbsphinx", "nc-time-axis", "netCDF4", "numbagg", "pooch", "pydap", "rasterio", "scanpydoc", "scipy", "seaborn", "sphinx-autosummary-accessors", "sphinx-rtd-theme", "zarr"] -io = ["cfgrib", "cftime", "fsspec", "h5netcdf", "netCDF4", "pooch", "pydap", "rasterio", "scipy", "zarr"] -parallel = ["dask[complete]"] -viz = ["matplotlib", "nc-time-axis", "seaborn"] +accel = ["scipy", "bottleneck", "numbagg", "flox"] +complete = ["netcdf4", "h5netcdf", "scipy", "pydap", "zarr", "fsspec", "cftime", "rasterio", "cfgrib", "pooch", "bottleneck", "numbagg", "flox", "dask", "matplotlib", "seaborn", "nc-time-axis"] +docs = ["netcdf4", "h5netcdf", "scipy", "pydap", "zarr", "fsspec", "cftime", "rasterio", "cfgrib", "pooch", "bottleneck", "numbagg", "flox", "dask", "matplotlib", "seaborn", "nc-time-axis", "sphinx-autosummary-accessors", "sphinx-rtd-theme", "ipython", "ipykernel", "jupyter-client", "nbsphinx", "scanpydoc"] +io = ["netcdf4", "h5netcdf", "scipy", "pydap", "zarr", "fsspec", "cftime", "rasterio", "cfgrib", "pooch"] +parallel = ["dask"] +viz = ["matplotlib", "seaborn", "nc-time-axis"] [[package]] name = "xdoctest" @@ -1559,15 +1541,15 @@ Pygments = {version = "*", optional = true, markers = "python_version >= \"3.5.0 six = "*" [package.extras] -all = ["IPython", "IPython", "Pygments", "Pygments", "attrs", "cmake", "codecov", "colorama", "debugpy", "debugpy", "debugpy", "debugpy", "debugpy", "ipykernel", "ipykernel", "ipython-genutils", "jedi", "jinja2", "jupyter-client", "jupyter-client", "jupyter-core", "nbconvert", "ninja", "pybind11", "pytest", "pytest", "pytest", "pytest", "pytest", "pytest", "pytest-cov", "pytest-cov", "pytest-cov", "pytest-cov", "scikit-build", "six", "typing"] -all-strict = ["IPython (==7.10.0)", "IPython (==7.23.1)", "Pygments (==2.0.0)", "Pygments (==2.4.1)", "attrs (==19.2.0)", "cmake (==3.21.2)", "codecov (==2.0.15)", "colorama (==0.4.1)", "debugpy (==1.0.0)", "debugpy (==1.0.0)", "debugpy (==1.0.0)", "debugpy (==1.3.0)", "debugpy (==1.6.0)", "ipykernel (==5.2.0)", "ipykernel (==6.0.0)", "ipython-genutils (==0.2.0)", "jedi (==0.16)", "jinja2 (==3.0.0)", "jupyter-client (==6.1.5)", "jupyter-client (==7.0.0)", "jupyter-core (==4.7.0)", "nbconvert (==6.0.0)", "ninja (==1.10.2)", "pybind11 (==2.7.1)", "pytest (==4.6.0)", "pytest (==4.6.0)", "pytest (==4.6.0)", "pytest (==4.6.0)", "pytest (==4.6.0)", "pytest (==6.2.5)", "pytest-cov (==2.8.1)", "pytest-cov (==2.8.1)", "pytest-cov (==2.9.0)", "pytest-cov (==3.0.0)", "scikit-build (==0.11.1)", "six (==1.11.0)", "typing (==3.7.4)"] -colors = ["Pygments", "Pygments", "colorama"] -jupyter = ["IPython", "IPython", "attrs", "debugpy", "debugpy", "debugpy", "debugpy", "debugpy", "ipykernel", "ipykernel", "ipython-genutils", "jedi", "jinja2", "jupyter-client", "jupyter-client", "jupyter-core", "nbconvert"] -optional = ["IPython", "IPython", "Pygments", "Pygments", "attrs", "colorama", "debugpy", "debugpy", "debugpy", "debugpy", "debugpy", "ipykernel", "ipykernel", "ipython-genutils", "jedi", "jinja2", "jupyter-client", "jupyter-client", "jupyter-core", "nbconvert", "tomli"] -optional-strict = ["IPython (==7.10.0)", "IPython (==7.23.1)", "Pygments (==2.0.0)", "Pygments (==2.4.1)", "attrs (==19.2.0)", "colorama (==0.4.1)", "debugpy (==1.0.0)", "debugpy (==1.0.0)", "debugpy (==1.0.0)", "debugpy (==1.3.0)", "debugpy (==1.6.0)", "ipykernel (==5.2.0)", "ipykernel (==6.0.0)", "ipython-genutils (==0.2.0)", "jedi (==0.16)", "jinja2 (==3.0.0)", "jupyter-client (==6.1.5)", "jupyter-client (==7.0.0)", "jupyter-core (==4.7.0)", "nbconvert (==6.0.0)", "tomli (==0.2.0)"] +tests = ["pytest-cov", "pytest", "typing", "pytest", "pytest-cov", "pytest", "pytest-cov", "pytest", "pytest", "pytest-cov", "pytest", "scikit-build", "pybind11", "ninja", "codecov", "cmake"] +tests-strict = ["pytest-cov (==3.0.0)", "pytest (==6.2.5)", "typing (==3.7.4)", "pytest (==4.6.0)", "pytest (==4.6.0)", "pytest-cov (==2.9.0)", "pytest (==4.6.0)", "pytest-cov (==2.8.1)", "pytest (==4.6.0)", "pytest (==4.6.0)", "pytest-cov (==2.8.1)", "scikit-build (==0.11.1)", "pybind11 (==2.7.1)", "ninja (==1.10.2)", "codecov (==2.0.15)", "cmake (==3.21.2)"] runtime-strict = ["six (==1.11.0)"] -tests = ["cmake", "codecov", "ninja", "pybind11", "pytest", "pytest", "pytest", "pytest", "pytest", "pytest", "pytest-cov", "pytest-cov", "pytest-cov", "pytest-cov", "scikit-build", "typing"] -tests-strict = ["cmake (==3.21.2)", "codecov (==2.0.15)", "ninja (==1.10.2)", "pybind11 (==2.7.1)", "pytest (==4.6.0)", "pytest (==4.6.0)", "pytest (==4.6.0)", "pytest (==4.6.0)", "pytest (==4.6.0)", "pytest (==6.2.5)", "pytest-cov (==2.8.1)", "pytest-cov (==2.8.1)", "pytest-cov (==2.9.0)", "pytest-cov (==3.0.0)", "scikit-build (==0.11.1)", "typing (==3.7.4)"] +optional = ["ipykernel", "ipython", "jupyter-client", "nbconvert", "jinja2", "jupyter-core", "jedi", "attrs", "pygments", "ipython-genutils", "debugpy", "debugpy", "debugpy", "ipykernel", "debugpy", "ipython", "jupyter-client", "pygments", "tomli", "debugpy", "colorama"] +optional-strict = ["ipykernel (==6.0.0)", "IPython (==7.23.1)", "jupyter-client (==7.0.0)", "nbconvert (==6.0.0)", "jinja2 (==3.0.0)", "jupyter-core (==4.7.0)", "jedi (==0.16)", "attrs (==19.2.0)", "Pygments (==2.4.1)", "ipython-genutils (==0.2.0)", "debugpy (==1.6.0)", "debugpy (==1.0.0)", "debugpy (==1.0.0)", "ipykernel (==5.2.0)", "debugpy (==1.0.0)", "IPython (==7.10.0)", "jupyter-client (==6.1.5)", "Pygments (==2.0.0)", "tomli (==0.2.0)", "debugpy (==1.3.0)", "colorama (==0.4.1)"] +jupyter = ["ipykernel", "ipython", "jupyter-client", "nbconvert", "jinja2", "jupyter-core", "jedi", "attrs", "ipython-genutils", "debugpy", "debugpy", "debugpy", "ipykernel", "debugpy", "ipython", "jupyter-client", "debugpy"] +colors = ["pygments", "pygments", "colorama"] +all = ["ipykernel", "ipython", "jupyter-client", "nbconvert", "pytest-cov", "jinja2", "jupyter-core", "jedi", "attrs", "pygments", "pytest", "ipython-genutils", "debugpy", "typing", "debugpy", "debugpy", "pytest", "ipykernel", "debugpy", "ipython", "jupyter-client", "pytest-cov", "pytest", "pytest-cov", "pytest", "pygments", "pytest", "debugpy", "pytest-cov", "pytest", "colorama", "six", "scikit-build", "pybind11", "ninja", "codecov", "cmake"] +all-strict = ["ipykernel (==6.0.0)", "IPython (==7.23.1)", "jupyter-client (==7.0.0)", "nbconvert (==6.0.0)", "pytest-cov (==3.0.0)", "jinja2 (==3.0.0)", "jupyter-core (==4.7.0)", "jedi (==0.16)", "attrs (==19.2.0)", "Pygments (==2.4.1)", "pytest (==6.2.5)", "ipython-genutils (==0.2.0)", "debugpy (==1.6.0)", "typing (==3.7.4)", "debugpy (==1.0.0)", "debugpy (==1.0.0)", "pytest (==4.6.0)", "ipykernel (==5.2.0)", "debugpy (==1.0.0)", "IPython (==7.10.0)", "jupyter-client (==6.1.5)", "pytest (==4.6.0)", "pytest-cov (==2.9.0)", "pytest (==4.6.0)", "pytest-cov (==2.8.1)", "Pygments (==2.0.0)", "pytest (==4.6.0)", "debugpy (==1.3.0)", "pytest (==4.6.0)", "pytest-cov (==2.8.1)", "colorama (==0.4.1)", "six (==1.11.0)", "scikit-build (==0.11.1)", "pybind11 (==2.7.1)", "ninja 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+1,12 @@ [tool.poetry] name = "xpypact" -version = "0.1.4" +version = "0.1.5a0" description = "\"Python tools to work with elements and isotopes\"" authors = ["dvp "] license = "MIT" homepage = "https://github.com/MC-kit/xpypact" repository = "https://github.com/MC-kit/xpypact" -# documentation = "https://xpypact.readthedocs.io +documentation = "https://xpypact.readthedocs.io" keywords = ["FISPACT", "nuclide", "isotope", "abundance"] readme = "README.rst" packages = [ @@ -27,12 +27,12 @@ classifiers = [ # xpypact = "xpypact.cli.runner:xpypact" [tool.poetry.urls] -# documentation = "https://xpypact.readthedocs.io" +documentation = "https://xpypact.readthedocs.io" Chnagelog = "https://github.com/MC-kit/xpypact/releases" [tool.poetry.dependencies] -python = ">=3.8,<4.0" # TODO dvp: numpy 1.21.4 sets upper limit to 3.11 +python = ">=3.8,<4.0" h5netcdf = ">=0.13.1" mckit-nuclides = {version = ">=0.1.1", allow-prereleases = true} multipledispatch = ">=0.6.0" @@ -46,7 +46,7 @@ xarray = 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b/src/xpypact/utils/resource.py @@ -64,7 +64,14 @@ def __init__(self) -> None: super().__init__("Cannot define package.") # pragma: no cover -def _resolve_package(package: Optional[str] = None) -> str: +def _resolve_package( + package, +): + # No typing in this function, + # otherwise typeguard decorates this and + # the frame offset is to be found in a bit + # more complex way. + # ANN202 is ignored for this file (see .flake8) if package is None: module = inspect.getmodule(inspect.stack()[2][0]) if module is None: diff --git a/tools/bump b/tools/bump new file mode 100755 index 0000000..d61b6f0 --- /dev/null +++ b/tools/bump @@ -0,0 +1,30 @@ +#!/bin/bash + +usage() { +cat << 'EOM' + +Helper to bump and commit the project version + +Usage: + bump + or + bump --help" + +See also poetry help: + +EOM + poetry version --help +} + +main() { + local version="${1:-patch}" + if [[ "$version" == "--help" ]]; then + usage + else + poetry version "$version" && git commit -m "bump: version $(poetry version)" pyproject.toml + fi +} + +main "$@" + +# vim: set ts=4 sw=4 tw=92 ss=0 ft=sh et ai : diff --git a/tools/clean b/tools/clean new file mode 100755 index 0000000..9f37359 --- /dev/null +++ b/tools/clean @@ -0,0 +1,32 @@ +#!/usr/bin/env bash + +deldir() { + for d in "$@"; do + if [[ -e $d ]]; then + rm -frd $d + fi + done +} + +deldir_recursively() { + for d in "$@"; do + find . -type d -name "$d" -exec rm -rf {} + + done +} + +clean() { + if [[ "$#" -eq "0" ]]; then + deldir build dist .egg *.egg-info .nox + deldir_recursively "__pycache__" ".benchmarks" + rm -f mckit/geometry*.so + rm -f setup.py + else + deldir "$@" + fi +} + +is_sourced() { + [[ ${FUNCNAME[@]: -1} == "source" ]] +} + +is_sourced || clean "$@" diff --git a/tools/install-poetry b/tools/install-poetry index 2ed2d3d..379ed49 100755 --- a/tools/install-poetry +++ b/tools/install-poetry @@ -1,5 +1,37 @@ #!/bin/bash +# This can be used for readthedocs post_create_environment +# https://docs.readthedocs.io/en/latest/build-customization.html +# +#build: +# os: "ubuntu-22.04" +# tools: +# python: "3.10" +# jobs: +# post_create_environment: +# # Install poetry +# # https://python-poetry.org/docs/#osx--linux--bashonwindows-install-instructions +# - curl -sSL https://raw.githubusercontent.com/python-poetry/poetry/master/get-poetry.py | python - +# ... the following is better (?): +# - tools/install-poetry +# # Tell poetry to not use a virtual environment +# - $HOME/.poetry/bin/poetry config virtualenvs.create false +# # Install project's dependencies +# - $HOME/.poetry/bin/poetry install +# +# Then build can be customized: +#version: 2 +#build: +# os: "ubuntu-22.04" +# tools: +# python: "3.10" +# commands: +# - nox -s docs-build +# +# However, readthedocs works fine without this, and results are actually not differ from nox build +# Check if this gets worse with document development. +# + curl -sSL https://install.python-poetry.org | python3 - poetry --version poetry completions bash >> ~/.bash_completion diff --git a/tools/reset-pyenv b/tools/reset-pyenv new file mode 100755 index 0000000..57a7279 --- /dev/null +++ b/tools/reset-pyenv @@ -0,0 +1,13 @@ +#!/bin/bash + +# set -exu + +pyenv virtualenv-delete -f xpypact +pyenv virtualenv 3.10.6 xpypact +pyenv rehash +poetry install +pyenv rehash +python -c "import xpypact; print(xpypact.__version__)" + + +# vim: set ts=4 sw=4 tw=92 ss=0 ft=sh et ai :