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DESCRIPTION
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DESCRIPTION
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Type: Package
Package: NGCHM
Title: Next Generation Clustered Heat Maps
Version: 1.0.3
Authors@R: c(
person(c("Bradley", "M"), "Broom", , "[email protected]", role = "aut",
comment = c(ORCID = "0000-0002-0915-3164")),
person(c("Mary", "A"), "Rohrdanz", , "[email protected]", role = c("ctb", "cre")),
person("Chris", "Wakefield", , "[email protected]", role = "ctb"),
person(c("James", "M"), "Melott", , "[email protected]", role = "ctb"),
person("MD Anderson Cancer Center", role = "cph")
)
Description: Next-Generation Clustered Heat Maps (NG-CHMs) allow for
dynamic exploration of heat map data in a web browser. 'NGCHM' allows
users to create both stand-alone HTML files containing a
Next-Generation Clustered Heat Map, and .ngchm files to view in the
NG-CHM viewer. See Ryan MC, Stucky M, et al (2020)
<doi:10.12688/f1000research.20590.2> for more details.
License: GPL-3
URL: https://md-anderson-bioinformatics.github.io/NGCHM-R/,
https://github.com/MD-Anderson-Bioinformatics/NGCHM-R
Depends:
R (>= 3.5.0)
Imports:
digest,
grDevices,
htmltools,
httr,
jsonlite,
logger (>= 0.2.0),
methods,
stats,
tsvio,
utils
Suggests:
knitr,
rmarkdown,
Rtsne,
testthat,
umap,
uwot
Enhances:
NGCHMDemoData,
NGCHMSupportFiles
Additional_repositories: https://md-anderson-bioinformatics.r-universe.dev
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.2.3
Collate:
'internalFunctions.R'
'allClasses.R'
'allGenerics.R'
'allMethods.R'
'functions.R'
'chmFromJSON.R'
'dendrogram-fixes.R'
'shaidy.R'
'ngchmshaidy.R'
'zzz.R'
'package.R'
SystemRequirements:
Java (>= 11)
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