diff --git a/_posts/2024-11-22-release-2.8.0.md b/_posts/2024-11-22-release-2.8.0.md index 8ef452f2..b3115c7e 100644 --- a/_posts/2024-11-22-release-2.8.0.md +++ b/_posts/2024-11-22-release-2.8.0.md @@ -176,7 +176,7 @@ For a full list of changes, bugfixes and deprecations see the [CHANGELOG][]. * Deprecations of old guessing functionality (in favor of the new Guesser API) * `MDAnalysis.topology.guessers` is deprecated in favour of the new - Guessers API and will be removed in version 3.0 (PR #4752) + Guessers API and will be removed in version 3.0 (PR #4752) * The `guess_bonds`, `vdwradii`, `fudge_factor`, and `lower_bound` kwargs are deprecated for bond guessing during Universe creation. Instead, pass `("bonds", "angles", "dihedrals")` into @@ -187,12 +187,12 @@ For a full list of changes, bugfixes and deprecations see the [CHANGELOG][]. `Universe.guess_TopologyAttrs`, they will override the previous values of those kwargs. (Issue #4756, PR #4757) * `MDAnalysis.topology.tables` is deprecated in favour of - `MDAnalysis.guesser.tables` and will be removed in version 3.0 (PR #4752) + `MDAnalysis.guesser.tables` and will be removed in version 3.0 (PR #4752) * Element guessing in the `ITPParser` is deprecated and will be removed in version 3.0 - (Issue #4698) + (Issue #4698) * **Unknown masses are still set to 0.0 for current version**, this - will be changed **in version 3.0.0 and replaced by - `Masses` "no_value_label" attribute (`np.nan`)** (PR #3753) + will be changed **in version 3.0.0 and replaced by + `Masses` "no_value_label" attribute (`np.nan`)** (PR #3753) * A number of analysis modules have been moved into their own [MDAKits][], following the [3.0 roadmap towards a trimmed down core library][roadmap]. Until release 3.0, these modules are still @@ -202,13 +202,13 @@ For a full list of changes, bugfixes and deprecations see the [CHANGELOG][]. install the MDAKit explicitly and then import it by themselves. * The `MDAnalysis.analysis.encore` module has been deprecated in - favour of the [mdaencore]() MDAKit and will be removed in version - 3.0.0 (PR #4737) + favour of the [mdaencore]() MDAKit and will be removed in version + 3.0.0 (PR #4737) * The `MDAnalysis.analysis.waterdynamics` module has been deprecated in favour - of the [waterdynamics][] MDAKit and will be removed in version 3.0.0 (PR #4404) + of the [waterdynamics][] MDAKit and will be removed in version 3.0.0 (PR #4404) * The `MDAnalysis.analysis.psa` module has been deprecated in favour of - the [PathSimAnalysis][] MDAKit and will be removed in version 3.0.0 - (PR #4403) + the [PathSimAnalysis][] MDAKit and will be removed in version 3.0.0 + (PR #4403) * The MMTF Reader is deprecated and will be removed in version 3.0 as the MMTF format is no longer supported (Issue #4634).