gh-ci.yaml

name: GH Actions CI
on:
  push:
    branches:
      - master
  pull_request:
    branches:
      - master
  schedule:
    # 3 am Tuesdays and Fridays
    - cron: "0 3 * * 2,5"

concurrency:
  group: "${{ github.ref }}-${{ github.head_ref }}-${{ github.workflow }}"
  cancel-in-progress: true

defaults:
  run:
    shell: bash

jobs:
  unittests:
    if: "github.repository == 'MDAnalysis/panedr'"
    runs-on: ${{ matrix.os }}
    strategy:
      fail-fast: false
      matrix:
        os: [ubuntu-latest, ]
        python-version: ["3.9", "3.10", "3.11", "3.12", "3.13"]
        include:
          - os: windows-latest
            python-version: "3.13"
          - os: macos-latest
            python-version: "3.13"

    steps:
    - uses: actions/checkout@v4

    - uses: actions/setup-python@v4
      with:
        python-version: ${{ matrix.python-version }}

    - name: install optional deps
      run: |
        pip install pytest pytest-xdist pytest-cov

    - name: install pyedr package
      run: |
        cd pyedr && python -m pip install -e .
        pip list

    - name: run pyedr tests
      run: |
        pytest -n 2 -v --cov=pyedr/pyedr --cov-report=xml --color=yes pyedr/pyedr/tests

    - name: install panedr package
      run: |
        pip install pandas
        cd panedr && pip install -e .

    - name: run panedr tests
      run: |
        pytest -n2 -v --cov=panedr/panedr --cov-report=xml --color=yes --cov-append panedr/panedr/tests

    - name: test imports
      # Exit the git repo in order for pbr to stop auto-picking up version info
      # from the local git data
      working-directory: ../
      run: |
        python -Ic "from pyedr import edr_to_dict"
        python -Ic "from panedr import edr_to_df"

    - name: codecov
      if: ${{ github.event_name != 'schedule' }}
      uses: codecov/codecov-action@v3
      with:
        token: ${{ secrets.CODECOV_TOKEN }}
        file: coverage.xml
        fail_ci_if_error: True
        verbose: True