SQL changes TBD for revisions

[alistairewj]

• Change dialysis exclusion from first week to before 12 hours (i.e. on or before ICU admission)
• Change AKI definition to include dialysis as AKI level 3 (specifically add it to the aki_48hr clause in aki.sql)
• change nephrotoxic exposure to [-12, 12] hours (sql/nephrotoxic_agents.sql)
  • one feature per confounder (AYC):
  • https://github.com/MIT-LCP/vancomycin-nephrotoxicity/blob/master/sql/aminoglycosides.sql
  • https://github.com/MIT-LCP/vancomycin-nephrotoxicity/blob/master/sql/amphotericin.sql
  • https://github.com/MIT-LCP/vancomycin-nephrotoxicity/blob/master/sql/antivirals.sql
  • https://github.com/MIT-LCP/vancomycin-nephrotoxicity/blob/master/sql/calcineurin_inhibitors.sql
  • https://github.com/MIT-LCP/vancomycin-nephrotoxicity/blob/master/sql/loop_diuretics.sql
  • https://github.com/MIT-LCP/vancomycin-nephrotoxicity/blob/master/sql/nsaids.sql
  • https://github.com/MIT-LCP/vancomycin-nephrotoxicity/blob/master/sql/vasopressors.sql
• add apache iv diagnosis to dataframe (demographics table)
• add yes/no surgical to dataframe (demographics table)
• add comorbidities to dataframe (demographics table)

[alyssayc]

I believe I made the first two changes already - in dialysis.sql and AKI.sql