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The new check added in 1.2.0 for checking for result consistency happens before the check for existing multiqc_data files. As such, when any individuals do not have output yet, the script will throw out warnings about file corruption or results being outdated.
This is clearly not intended, and needs fixing in a patch 😬
Here's an example of the errors:
## collect_results.py: 1.2.0
Found 1 individuals in input file.
Required file /mnt/archgen/Autorun_eager/eager_outputs//SG/ZMT/ZMT093/multiqc/multiqc_data/multiqc_data.json not found! Results for this sample might be corrupted.
WARNING: There is a large difference in the creation time between the MultiQC data file '/mnt/archgen/Autorun_eager/eager_outputs//SG/ZMT/ZMT093/multiqc/multiqc_data/multiqc_data.json' and the corresponding HTML '/mnt/archgen/Autorun_eager/eager_outputs//SG/ZMT/ZMT093/multiqc/multiqc_report.html'. Skipping.
WARNING: No data was found for 1 individuals!
The text was updated successfully, but these errors were encountered:
The new check added in 1.2.0 for checking for result consistency happens before the check for existing multiqc_data files. As such, when any individuals do not have output yet, the script will throw out warnings about file corruption or results being outdated.
This is clearly not intended, and needs fixing in a patch 😬
Here's an example of the errors:
The text was updated successfully, but these errors were encountered: