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DESCRIPTION
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DESCRIPTION
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Package: CovidMutations
Type: Package
Title: Mutation Analysis and Assay Validation Toolkit for COVID-19 (Coronavirus Disease 2019)
Version: 0.1.3
Date: 2020-08-29
Authors@R:
c(
person(
"Shaoqian",
"Ma",
email = "[email protected]",
role = c("aut", "cre"),
comment = c(ORCID = '0000-0001-8950-0711')
),
person(
"Yongyou",
"Zhang",
email = "[email protected]",
role = c("aut"),
comment = c(ORCID = '0000-0003-2413-9106')
)
)
Description: A feasible framework for mutation analysis and reverse transcription
polymerase chain reaction (RT-PCR) assay evaluation of COVID-19, including
mutation profile visualization, statistics and mutation ratio of each assay.
The mutation ratio is conducive to evaluating the coverage of RT-PCR assays in
large-sized samples<doi:10.20944/preprints202004.0529.v1>.
Depends:
R (>= 3.6)
License: GPL-3 | file LICENSE
Encoding: UTF-8
LazyData: true
Imports:
ggplot2,
cowplot,
seqinr,
stringr,
grDevices,
graphics,
utils,
ggpubr,
dplyr,
VennDiagram
RoxygenNote: 7.1.1
NeedsCompilation: no
URL: https://github.com/MSQ-123/CovidMutations
BugReports: https://github.com/MSQ-123/CovidMutations/issues
Suggests:
knitr,
rmarkdown,
testthat,
BiocStyle
VignetteBuilder: knitr