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Copy pathraw_variants_ann_SNP_clean_all_passed.stats.txt
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raw_variants_ann_SNP_clean_all_passed.stats.txt
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Location : raw_variants_ann_SNP_clean_all_passed.vcf.gz
Failed Filters : 0
Passed Filters : 20404
Sample Name: SRR7309325
SNPs : 4838
MNPs : 0
Insertions : 0
Deletions : 0
Indels : 0
Same as reference : 587
Missing Genotype : 14972
Partial Genotype : 7
Phased Genotypes : 63.3% (3439/5432)
SNP Transitions/Transversions: 1.98 (5574/2821)
Total Het/Hom ratio : 0.36 (1289/3556)
SNP Het/Hom ratio : 0.36 (1284/3554)
MNP Het/Hom ratio : - (0/0)
Insertion Het/Hom ratio : - (0/0)
Deletion Het/Hom ratio : - (0/0)
Indel Het/Hom ratio : - (0/0)
Insertion/Deletion ratio : - (0/0)
Indel/SNP+MNP ratio : 0.00 (0/4838)
Sample Name: SRR7309332
SNPs : 4517
MNPs : 0
Insertions : 0
Deletions : 0
Indels : 0
Same as reference : 796
Missing Genotype : 15086
Partial Genotype : 5
Phased Genotypes : 60.3% (3206/5318)
SNP Transitions/Transversions: 1.77 (5080/2877)
Total Het/Hom ratio : 0.32 (1089/3433)
SNP Het/Hom ratio : 0.32 (1084/3433)
MNP Het/Hom ratio : - (0/0)
Insertion Het/Hom ratio : - (0/0)
Deletion Het/Hom ratio : - (0/0)
Indel Het/Hom ratio : - (0/0)
Insertion/Deletion ratio : - (0/0)
Indel/SNP+MNP ratio : 0.00 (0/4517)
Sample Name: SRR7309338
SNPs : 13217
MNPs : 0
Insertions : 0
Deletions : 0
Indels : 0
Same as reference : 892
Missing Genotype : 6291
Partial Genotype : 4
Phased Genotypes : 69.5% (9810/14113)
SNP Transitions/Transversions: 1.51 (15248/10106)
Total Het/Hom ratio : 0.09 (1088/12133)
SNP Het/Hom ratio : 0.09 (1084/12133)
MNP Het/Hom ratio : - (0/0)
Insertion Het/Hom ratio : - (0/0)
Deletion Het/Hom ratio : - (0/0)
Indel Het/Hom ratio : - (0/0)
Insertion/Deletion ratio : - (0/0)
Indel/SNP+MNP ratio : 0.00 (0/13217)