DESCRIPTION

Package: ChIPKernels
Type: Package
Title: String kernels for ChIP-Seq
Version: 1.1
Date: 2015-05-25
Author: Manu Setty
Maintainer: Manu Setty <manu@cbio.mskcc.org>
Depends:
    IRanges,
    XVector,
    Biostrings,
    BSgenome,
    gtools,
    GenomicRanges,
    sfsmisc,
    parallel,
    kernlab,
    Matrix,
    S4Vectors
Imports:
    IRanges,
    XVector,
    graphics,
    methods,
    stats,
    utils,
    BiocGenerics,
    IRanges,
    Biostrings, 
    XVector,
    S4Vectors
LinkingTo: IRanges, Biostrings, XVector, S4Vectors
Description: Collection of methods for building different string kernels used
    for ChIP-Seq
License: GPL (>= 2)
LazyLoad: yes
Collate:
    'ChIPKernels-internal.R'
    'positional_wildcard_dictionary.R'
    'misc.R'
    'build_features_kernel.R'
    'chipkernels_utils.R'
    'mismatch_dictionary.R'