diff --git a/R/miloR.R b/R/miloR.R index 3f4e90e..f682be8 100644 --- a/R/miloR.R +++ b/R/miloR.R @@ -4,7 +4,7 @@ #' as representative neighbourhoods on a nearest neighbour graph. Hypothesis testing is performed using a #' negative bionomial generalized linear model. #' -#' @aliases miloR-package +#' @aliases miloR #' @importFrom Rcpp evalCpp #' @useDynLib miloR #' @name miloR diff --git a/vignettes/milo_gastrulation.Rmd b/vignettes/milo_gastrulation.Rmd index e37defd..f9d3bef 100644 --- a/vignettes/milo_gastrulation.Rmd +++ b/vignettes/milo_gastrulation.Rmd @@ -328,7 +328,7 @@ In these examples we settle for `overlap=5` and `max.lfc.delta=5`, as we need at ```{r, dev="jpeg"} set.seed(42) -da_results <- groupNhoods(embryo_milo, da_results, max.lfc.delta = 1, overlap=3) +da_results <- groupNhoods(embryo_milo, da_results, max.lfc.delta = 10, overlap=1) plotNhoodGroups(embryo_milo, da_results, layout="umap") plotDAbeeswarm(da_results, group.by = "NhoodGroup") ```