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how to set the contrast group with normal vs tumor for what i want, not default #357

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honghh2018 opened this issue Dec 13, 2024 · 2 comments

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@honghh2018
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Hi,
in my case, i want to set the contrast direct for normal vs tumor not the reverse for below code:
DA_results <- testNhoods(milo_sce2, design = ~ tissue, design.df = design_df2)
design_df2 the data.frame look like below:

image

how to specific the contrast direct ?
any advice would be appreciated,
Best,
hanhuihong

@honghh2018
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Had anyone hear this issue?

@MikeDMorgan
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