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df1_query.sh
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df1_query.sh
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echo "genelist_impc.txt"
echo -n -e "PP0315 SCN4A "; zgrep SCN4A /lustre/scratch115/realdata/mdt3/projects/pagedata/data_freezes/2015-09-03/PP/03/15/PP0315/vcf/PP0315.uber_vep_tabix_qc.2015-11-11.vcf.gz | grep 62022122
echo -n -e "PP0004 LAMA5 "; zgrep LAMA5 /lustre/scratch115/realdata/mdt3/projects/pagedata/data_freezes/2015-09-03/PP/00/04/PP0004/vcf/PP0004.uber_vep_tabix_qc.2015-11-11.vcf.gz | grep 60892813
echo -n -e "PP0004 LAMA5 "; zgrep LAMA5 /lustre/scratch115/realdata/mdt3/projects/pagedata/data_freezes/2015-09-03/PP/00/04/PP0004/vcf/PP0004.uber_vep_tabix_qc.2015-11-11.vcf.gz | grep 60886088
echo -n -e "PP0025 ATP6V1B2 "; zgrep ATP6V1B2 /lustre/scratch115/realdata/mdt3/projects/pagedata/data_freezes/2015-09-03/PP/00/25/PP0025/vcf/PP0025.uber_vep_tabix_qc.2015-11-11.vcf.gz | grep 20069263
echo -n -e "PP0267 DHX33 "; zgrep DHX33 /lustre/scratch115/realdata/mdt3/projects/pagedata/data_freezes/2015-09-03/PP/02/67/PP0267/vcf/PP0267.uber_vep_tabix_qc.2015-11-11.vcf.gz | grep 5365725
echo -n -e "PP0065 AGAP1 "; zgrep AGAP1 /lustre/scratch115/realdata/mdt3/projects/pagedata/data_freezes/2015-09-03/PP/00/65/PP0065/vcf/PP0065.uber_vep_tabix_qc.2015-11-11.vcf.gz | grep 236839424
echo -n -e "PP0267 CLSPN "; zgrep CLSPN /lustre/scratch115/realdata/mdt3/projects/pagedata/data_freezes/2015-09-03/PP/02/67/PP0267/vcf/PP0267.uber_vep_tabix_qc.2015-11-11.vcf.gz | grep 36216977
echo -n -e "PP0273 KIF26B "; zgrep KIF26B /lustre/scratch115/realdata/mdt3/projects/pagedata/data_freezes/2015-09-03/PP/02/73/PP0273/vcf/PP0273.uber_vep_tabix_qc.2015-11-11.vcf.gz | grep 245851740
echo -n -e "PP0273 KIF26B "; zgrep KIF26B /lustre/scratch115/realdata/mdt3/projects/pagedata/data_freezes/2015-09-03/PP/02/73/PP0273/vcf/PP0273.uber_vep_tabix_qc.2015-11-11.vcf.gz | grep 245766015
echo -n -e "PP0267 DNAJC16 "; zgrep DNAJC16 /lustre/scratch115/realdata/mdt3/projects/pagedata/data_freezes/2015-09-03/PP/02/67/PP0267/vcf/PP0267.uber_vep_tabix_qc.2015-11-11.vcf.gz | grep 15894604
echo -n -e "PP0303 CHRNA1 "; zgrep CHRNA1 /lustre/scratch115/realdata/mdt3/projects/pagedata/data_freezes/2015-09-03/PP/03/03/PP0303/vcf/PP0303.uber_vep_tabix_qc.2015-11-11.vcf.gz | grep 175614789
echo -n -e "PP0303 CHRNA1 "; zgrep CHRNA1 /lustre/scratch115/realdata/mdt3/projects/pagedata/data_freezes/2015-09-03/PP/03/03/PP0303/vcf/PP0303.uber_vep_tabix_qc.2015-11-11.vcf.gz | grep 175619069
echo "genelist_lethal.txt"
echo -n -e "PP0062 TTN "; zgrep TTN /lustre/scratch115/realdata/mdt3/projects/pagedata/data_freezes/2015-09-03/PP/00/62/PP0062/vcf/PP0062.uber_vep_tabix_qc.2015-11-11.vcf.gz | grep 179454530
echo -n -e "PP0010 TTN "; zgrep TTN /lustre/scratch115/realdata/mdt3/projects/pagedata/data_freezes/2015-09-03/PP/00/10/PP0010/vcf/PP0010.uber_vep_tabix_qc.2015-11-11.vcf.gz | grep 179430460
echo -n -e "PP0010 TTN "; zgrep TTN /lustre/scratch115/realdata/mdt3/projects/pagedata/data_freezes/2015-09-03/PP/00/10/PP0010/vcf/PP0010.uber_vep_tabix_qc.2015-11-11.vcf.gz | grep 179497758
echo -n -e "PP0047 TTN "; zgrep TTN /lustre/scratch115/realdata/mdt3/projects/pagedata/data_freezes/2015-09-03/PP/00/47/PP0047/vcf/PP0047.uber_vep_tabix_qc.2015-11-11.vcf.gz | grep 179452447
echo -n -e "PP0047 TTN "; zgrep TTN /lustre/scratch115/realdata/mdt3/projects/pagedata/data_freezes/2015-09-03/PP/00/47/PP0047/vcf/PP0047.uber_vep_tabix_qc.2015-11-11.vcf.gz | grep 179611552
echo -n -e "PP0010 TTN "; zgrep TTN /lustre/scratch115/realdata/mdt3/projects/pagedata/data_freezes/2015-09-03/PP/00/10/PP0010/vcf/PP0010.uber_vep_tabix_qc.2015-11-11.vcf.gz | grep 179579172
echo -n -e "PP0062 TTN "; zgrep TTN /lustre/scratch115/realdata/mdt3/projects/pagedata/data_freezes/2015-09-03/PP/00/62/PP0062/vcf/PP0062.uber_vep_tabix_qc.2015-11-11.vcf.gz | grep 179610967
echo -n -e "PP0062 TTN "; zgrep TTN /lustre/scratch115/realdata/mdt3/projects/pagedata/data_freezes/2015-09-03/PP/00/62/PP0062/vcf/PP0062.uber_vep_tabix_qc.2015-11-11.vcf.gz | grep 179424272
echo -n -e "PP0062 TTN "; zgrep TTN /lustre/scratch115/realdata/mdt3/projects/pagedata/data_freezes/2015-09-03/PP/00/62/PP0062/vcf/PP0062.uber_vep_tabix_qc.2015-11-11.vcf.gz | grep 179404498
echo -n -e "PP0013 NF1 "; zgrep NF1 /lustre/scratch115/realdata/mdt3/projects/pagedata/data_freezes/2015-09-03/PP/00/13/PP0013/vcf/PP0013.uber_vep_tabix_qc.2015-11-11.vcf.gz | grep 29562669
echo -n -e "PP0053 SMPD1 "; zgrep SMPD1 /lustre/scratch115/realdata/mdt3/projects/pagedata/data_freezes/2015-09-03/PP/00/53/PP0053/vcf/PP0053.uber_vep_tabix_qc.2015-11-11.vcf.gz | grep 6411935
echo -n -e "PP0062 FGFR3 "; zgrep FGFR3 /lustre/scratch115/realdata/mdt3/projects/pagedata/data_freezes/2015-09-03/PP/00/62/PP0062/vcf/PP0062.uber_vep_tabix_qc.2015-11-11.vcf.gz | grep 1806099
echo -n -e "PP0053 COL2A1 "; zgrep COL2A1 /lustre/scratch115/realdata/mdt3/projects/pagedata/data_freezes/2015-09-03/PP/00/53/PP0053/vcf/PP0053.uber_vep_tabix_qc.2015-11-11.vcf.gz | grep 48369853
echo -n -e "PP0059 NEB "; zgrep NEB /lustre/scratch115/realdata/mdt3/projects/pagedata/data_freezes/2015-09-03/PP/00/59/PP0059/vcf/PP0059.uber_vep_tabix_qc.2015-11-11.vcf.gz | grep 152384078
echo -n -e "PP0059 NEB "; zgrep NEB /lustre/scratch115/realdata/mdt3/projects/pagedata/data_freezes/2015-09-03/PP/00/59/PP0059/vcf/PP0059.uber_vep_tabix_qc.2015-11-11.vcf.gz | grep 152346522
echo "genelist_nondisease_lethal.txt"
echo -n -e "PP0065 SMARCC1 "; zgrep SMARCC1 /lustre/scratch115/realdata/mdt3/projects/pagedata/data_freezes/2015-09-03/PP/00/65/PP0065/vcf/PP0065.uber_vep_tabix_qc.2015-11-11.vcf.gz | grep 47727627
echo -n -e "PP0004 LAMA5 "; zgrep LAMA5 /lustre/scratch115/realdata/mdt3/projects/pagedata/data_freezes/2015-09-03/PP/00/04/PP0004/vcf/PP0004.uber_vep_tabix_qc.2015-11-11.vcf.gz | grep 60892813
echo -n -e "PP0004 LAMA5 "; zgrep LAMA5 /lustre/scratch115/realdata/mdt3/projects/pagedata/data_freezes/2015-09-03/PP/00/04/PP0004/vcf/PP0004.uber_vep_tabix_qc.2015-11-11.vcf.gz | grep 60886088
echo -n -e "PP0013 RERE "; zgrep RERE /lustre/scratch115/realdata/mdt3/projects/pagedata/data_freezes/2015-09-03/PP/00/13/PP0013/vcf/PP0013.uber_vep_tabix_qc.2015-11-11.vcf.gz | grep 8418331
echo -n -e "PP0013 RERE "; zgrep RERE /lustre/scratch115/realdata/mdt3/projects/pagedata/data_freezes/2015-09-03/PP/00/13/PP0013/vcf/PP0013.uber_vep_tabix_qc.2015-11-11.vcf.gz | grep 8418909
echo -n -e "PP0025 MACF1 "; zgrep MACF1 /lustre/scratch115/realdata/mdt3/projects/pagedata/data_freezes/2015-09-03/PP/00/25/PP0025/vcf/PP0025.uber_vep_tabix_qc.2015-11-11.vcf.gz | grep 39901245
echo -n -e "PP0025 MACF1 "; zgrep MACF1 /lustre/scratch115/realdata/mdt3/projects/pagedata/data_freezes/2015-09-03/PP/00/25/PP0025/vcf/PP0025.uber_vep_tabix_qc.2015-11-11.vcf.gz | grep 39851427
echo "genelist_nondisease_nonlethal.txt"
echo -n -e "PP0025 SEMA4D "; zgrep SEMA4D /lustre/scratch115/realdata/mdt3/projects/pagedata/data_freezes/2015-09-03/PP/00/25/PP0025/vcf/PP0025.uber_vep_tabix_qc.2015-11-11.vcf.gz | grep 91994007
echo -n -e "PP0019 DLG2 "; zgrep DLG2 /lustre/scratch115/realdata/mdt3/projects/pagedata/data_freezes/2015-09-03/PP/00/19/PP0019/vcf/PP0019.uber_vep_tabix_qc.2015-11-11.vcf.gz | grep 84028095
echo -n -e "PP0019 CD244 "; zgrep CD244 /lustre/scratch115/realdata/mdt3/projects/pagedata/data_freezes/2015-09-03/PP/00/19/PP0019/vcf/PP0019.uber_vep_tabix_qc.2015-11-11.vcf.gz | grep 160811672
echo "genelist_nondisease_postlethal.txt"
echo "genelist_nonlethal.txt"
echo -n -e "PP0004 GRIN2A "; zgrep GRIN2A /lustre/scratch115/realdata/mdt3/projects/pagedata/data_freezes/2015-09-03/PP/00/04/PP0004/vcf/PP0004.uber_vep_tabix_qc.2015-11-11.vcf.gz | grep 9857047
echo "genelist_postlethal.txt"
echo -n -e "PP0062 FGFR3 "; zgrep FGFR3 /lustre/scratch115/realdata/mdt3/projects/pagedata/data_freezes/2015-09-03/PP/00/62/PP0062/vcf/PP0062.uber_vep_tabix_qc.2015-11-11.vcf.gz | grep 1806099
echo -n -e "PP0059 NEB "; zgrep NEB /lustre/scratch115/realdata/mdt3/projects/pagedata/data_freezes/2015-09-03/PP/00/59/PP0059/vcf/PP0059.uber_vep_tabix_qc.2015-11-11.vcf.gz | grep 152384078
echo -n -e "PP0059 NEB "; zgrep NEB /lustre/scratch115/realdata/mdt3/projects/pagedata/data_freezes/2015-09-03/PP/00/59/PP0059/vcf/PP0059.uber_vep_tabix_qc.2015-11-11.vcf.gz | grep 152346522
echo -n -e "PP0053 SMPD1 "; zgrep SMPD1 /lustre/scratch115/realdata/mdt3/projects/pagedata/data_freezes/2015-09-03/PP/00/53/PP0053/vcf/PP0053.uber_vep_tabix_qc.2015-11-11.vcf.gz | grep 6411935