run_galaxy_classification.py

#!/usr/bin/env python
# coding=utf-8
# Copyright 2021 The HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
#     http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and

import logging
import os
import sys
import warnings
from dataclasses import dataclass, field
from typing import Optional

import evaluate
import numpy as np
import torch
# Disable CuDNN
torch.backends.cudnn.enabled = False
from datasets import load_dataset, load_from_disk
from PIL import Image
from torchvision.transforms import (
    CenterCrop,
    Compose,
    Lambda,
    Normalize,
    RandomHorizontalFlip,
    RandomResizedCrop,
    Resize,
    ToTensor,
)

import transformers
from transformers import (
    MODEL_FOR_IMAGE_CLASSIFICATION_MAPPING,
    AutoConfig,
    AutoImageProcessor,
    AutoModelForImageClassification,
    HfArgumentParser,
    Trainer,
    TrainingArguments,
    EarlyStoppingCallback,
    set_seed,
)
from transformers.trainer_utils import get_last_checkpoint
from transformers.utils import check_min_version, send_example_telemetry
from transformers.utils.versions import require_version


""" Fine-tuning a 🤗 Transformers model for image classification"""

logger = logging.getLogger(__name__)

MODEL_CONFIG_CLASSES = list(MODEL_FOR_IMAGE_CLASSIFICATION_MAPPING.keys())
MODEL_TYPES = tuple(conf.model_type for conf in MODEL_CONFIG_CLASSES)


def pil_loader(path: str):
    with open(path, "rb") as f:
        im = Image.open(f)
        return im.convert("RGB")


@dataclass
class DataTrainingArguments:
    """
    Arguments pertaining to what data we are going to input our model for training and eval.
    Using `HfArgumentParser` we can turn this class into argparse arguments to be able to specify
    them on the command line.
    """

    dataset_name: Optional[str] = field(
        default=None,
        metadata={
            "help": "Name of a dataset from the hub (could be your own, possibly private dataset hosted on the hub)."
        },
    )
    dataset_config_name: Optional[str] = field(
        default=None, metadata={"help": "The configuration name of the dataset to use (via the datasets library)."}
    )
    train_dir: Optional[str] = field(default=None, metadata={"help": "A folder containing the training data."})
    validation_dir: Optional[str] = field(default=None, metadata={"help": "A folder containing the validation data."})
    train_val_split: Optional[float] = field(
        default=0.15, metadata={"help": "Percent to split off of train for validation."}
    )
    max_train_samples: Optional[int] = field(
        default=None,
        metadata={
            "help": (
                "For debugging purposes or quicker training, truncate the number of training examples to this "
                "value if set."
            )
        },
    )
    max_eval_samples: Optional[int] = field(
        default=None,
        metadata={
            "help": (
                "For debugging purposes or quicker training, truncate the number of evaluation examples to this "
                "value if set."
            )
        },
    )
    image_column_name: str = field(
        default="image",
        metadata={"help": "The name of the dataset column containing the image data. Defaults to 'image'."},
    )
    label_column_name: str = field(
        default="label",
        metadata={"help": "The name of the dataset column containing the labels. Defaults to 'label'."},
    )

    def __post_init__(self):
        if self.dataset_name is None and (self.train_dir is None and self.validation_dir is None):
            raise ValueError(
                "You must specify either a dataset name from the hub or a train and/or validation directory."
            )


@dataclass
class ModelArguments:
    """
    Arguments pertaining to which model/config/tokenizer we are going to fine-tune from.
    """

    model_name_or_path: str = field(
        default="google/vit-base-patch16-224-in21k",
        metadata={"help": "Path to pretrained model or model identifier from huggingface.co/models"},
    )
    model_type: Optional[str] = field(
        default=None,
        metadata={"help": "If training from scratch, pass a model type from the list: " + ", ".join(MODEL_TYPES)},
    )
    config_name: Optional[str] = field(
        default=None, metadata={"help": "Pretrained config name or path if not the same as model_name"}
    )
    cache_dir: Optional[str] = field(
        default=None, metadata={"help": "Where do you want to store the pretrained models downloaded from s3"}
    )
    model_revision: str = field(
        default="main",
        metadata={"help": "The specific model version to use (can be a branch name, tag name or commit id)."},
    )
    image_processor_name: str = field(default=None, metadata={"help": "Name or path of preprocessor config."})
    token: str = field(
        default=None,
        metadata={
            "help": (
                "The token to use as HTTP bearer authorization for remote files. If not specified, will use the token "
                "generated when running `huggingface-cli login` (stored in `~/.huggingface`)."
            )
        },
    )
    use_auth_token: bool = field(
        default=None,
        metadata={
            "help": "The `use_auth_token` argument is deprecated and will be removed in v4.34. Please use `token` instead."
        },
    )
    trust_remote_code: bool = field(
        default=False,
        metadata={
            "help": (
                "Whether or not to allow for custom models defined on the Hub in their own modeling files. This option "
                "should only be set to `True` for repositories you trust and in which you have read the code, as it will "
                "execute code present on the Hub on your local machine."
            )
        },
    )
    ignore_mismatched_sizes: bool = field(
        default=False,
        metadata={"help": "Will enable to load a pretrained model whose head dimensions are different."},
    )


def main():
    # See all possible arguments in src/transformers/training_args.py
    # or by passing the --help flag to this script.
    # We now keep distinct sets of args, for a cleaner separation of concerns.

    parser = HfArgumentParser((ModelArguments, DataTrainingArguments, TrainingArguments))
    if len(sys.argv) == 2 and sys.argv[1].endswith(".json"):
        # If we pass only one argument to the script and it's the path to a json file,
        # let's parse it to get our arguments.
        model_args, data_args, training_args = parser.parse_json_file(json_file=os.path.abspath(sys.argv[1]))
    else:
        model_args, data_args, training_args = parser.parse_args_into_dataclasses()

    if model_args.use_auth_token is not None:
        warnings.warn(
            "The `use_auth_token` argument is deprecated and will be removed in v4.34. Please use `token` instead.",
            FutureWarning,
        )
        if model_args.token is not None:
            raise ValueError("`token` and `use_auth_token` are both specified. Please set only the argument `token`.")
        model_args.token = model_args.use_auth_token

    # Setup logging
    logging.basicConfig(
        format="%(asctime)s - %(levelname)s - %(name)s - %(message)s",
        datefmt="%m/%d/%Y %H:%M:%S",
        handlers=[logging.StreamHandler(sys.stdout)],
    )

    if training_args.should_log:
        # The default of training_args.log_level is passive, so we set log level at info here to have that default.
        transformers.utils.logging.set_verbosity_info()

    log_level = training_args.get_process_log_level()
    logger.setLevel(log_level)
    transformers.utils.logging.set_verbosity(log_level)
    transformers.utils.logging.enable_default_handler()
    transformers.utils.logging.enable_explicit_format()

    # Log on each process the small summary:
    logger.warning(
        f"Process rank: {training_args.local_rank}, device: {training_args.device}, n_gpu: {training_args.n_gpu}, "
        + f"distributed training: {training_args.parallel_mode.value == 'distributed'}, 16-bits training: {training_args.fp16}"
    )
    logger.info(f"Training/evaluation parameters {training_args}")

    # Detecting last checkpoint.
    last_checkpoint = None
    if os.path.isdir(training_args.output_dir) and training_args.do_train and not training_args.overwrite_output_dir:
        last_checkpoint = get_last_checkpoint(training_args.output_dir)
        if last_checkpoint is None and len(os.listdir(training_args.output_dir)) > 0:
            raise ValueError(
                f"Output directory ({training_args.output_dir}) already exists and is not empty. "
                "Use --overwrite_output_dir to overcome."
            )
        elif last_checkpoint is not None and training_args.resume_from_checkpoint is None:
            logger.info(
                f"Checkpoint detected, resuming training at {last_checkpoint}. To avoid this behavior, change "
                "the `--output_dir` or add `--overwrite_output_dir` to train from scratch."
            )

    # Set seed before initializing model.
    set_seed(training_args.seed)

    # Initialize our dataset and prepare it for the 'image-classification' task.
    if data_args.dataset_name is not None:
        dataset = load_from_disk(data_args.dataset_name)
        # dataset = load_dataset(
        #     data_args.dataset_name,
        #     data_args.dataset_config_name,
        #     cache_dir=model_args.cache_dir,
        #     token=model_args.token,
        # )
    else:
        data_files = {}
        if data_args.train_dir is not None:
            data_files["train"] = os.path.join(data_args.train_dir, "**")
        if data_args.validation_dir is not None:
            data_files["validation"] = os.path.join(data_args.validation_dir, "**")
        dataset = load_dataset(
            "imagefolder",
            data_files=data_files,
            cache_dir=model_args.cache_dir,
        )

    dataset_column_names = dataset["train"].column_names if "train" in dataset else dataset["validation"].column_names
    if data_args.image_column_name not in dataset_column_names:
        raise ValueError(
            f"--image_column_name {data_args.image_column_name} not found in dataset '{data_args.dataset_name}'. "
            "Make sure to set `--image_column_name` to the correct audio column - one of "
            f"{', '.join(dataset_column_names)}."
        )
    if data_args.label_column_name not in dataset_column_names:
        raise ValueError(
            f"--label_column_name {data_args.label_column_name} not found in dataset '{data_args.dataset_name}'. "
            "Make sure to set `--label_column_name` to the correct text column - one of "
            f"{', '.join(dataset_column_names)}."
        )

    def collate_fn(examples):
        pixel_values = torch.stack([example["pixel_values"] for example in examples])
        labels = torch.tensor([example[data_args.label_column_name] for example in examples])
        return {"pixel_values": pixel_values, "labels": labels}

    # If we don't have a validation split, split off a percentage of train as validation.
    data_args.train_val_split = None if "validation" in dataset.keys() else data_args.train_val_split
    if isinstance(data_args.train_val_split, float) and data_args.train_val_split > 0.0:
        split = dataset["train"].train_test_split(data_args.train_val_split)
        dataset["train"] = split["train"]
        dataset["validation"] = split["test"]

    # Prepare label mappings.
    # We'll include these in the model's config to get human readable labels in the Inference API.
    labels = dataset["train"].features[data_args.label_column_name].names
    label2id, id2label = {}, {}
    for i, label in enumerate(labels):
        label2id[label] = str(i)
        id2label[str(i)] = label

    # Load the accuracy metric from the datasets package
    accuracy = evaluate.load("metrics/accuracy.py")
    precision = evaluate.load("metrics/precision.py", average="micro")
    recall = evaluate.load("metrics/recall.py", average="micro")
    f1 = evaluate.load("metrics/f1.py")

    # Define our compute_metrics function. It takes an `EvalPrediction` object (a namedtuple with a
    # predictions and label_ids field) and has to return a dictionary string to float.
    def compute_metrics(p):
        """Computes accuracy on a batch of predictions"""
        predictions = np.argmax(p.predictions, axis=1)
        references = p.label_ids
        # Compute individual scores
        acc_score = accuracy.compute(predictions=predictions, references=references)
        precision_score = precision.compute(predictions=predictions, references=references, average='macro')
        recall_score = recall.compute(predictions=predictions, references=references, average='macro')
        f1_score = f1.compute(predictions=predictions, references=references, average='macro')
        return {
            "accuracy": acc_score['accuracy'],
            "precision": precision_score['precision'],
            "recall": recall_score['recall'],
            "f1": f1_score['f1']
        }

    config = AutoConfig.from_pretrained(
        model_args.config_name or model_args.model_name_or_path,
        num_labels=len(labels),
        label2id=label2id,
        id2label=id2label,
        finetuning_task="image-classification",
        cache_dir=model_args.cache_dir,
        revision=model_args.model_revision,
        token=model_args.token,
        trust_remote_code=model_args.trust_remote_code,
    )
    model = AutoModelForImageClassification.from_pretrained(
        model_args.model_name_or_path,
        from_tf=bool(".ckpt" in model_args.model_name_or_path),
        config=config,
        cache_dir=model_args.cache_dir,
        revision=model_args.model_revision,
        token=model_args.token,
        trust_remote_code=model_args.trust_remote_code,
        ignore_mismatched_sizes=model_args.ignore_mismatched_sizes,
    )

    size = (224, 224)
    normalize = Normalize(mean=[0.485, 0.456, 0.406], std=[0.229, 0.224, 0.225])
    _train_transforms = Compose(
        [
            Resize(size),
            # RandomHorizontalFlip(),
            ToTensor(),
            # normalize,
        ]
    )
    _val_transforms = Compose(
        [
            Resize(size),
            ToTensor(),
            # normalize,
        ]
    )

    def train_transforms(example_batch):
        """Apply _train_transforms across a batch."""
        example_batch["pixel_values"] = [
            _train_transforms(pil_img.convert("RGB")) for pil_img in example_batch[data_args.image_column_name]
        ]
        return example_batch

    def val_transforms(example_batch):
        """Apply _val_transforms across a batch."""
        example_batch["pixel_values"] = [
            _val_transforms(pil_img.convert("RGB")) for pil_img in example_batch[data_args.image_column_name]
        ]
        return example_batch

    if training_args.do_train:
        if "train" not in dataset:
            raise ValueError("--do_train requires a train dataset")
        if data_args.max_train_samples is not None:
            dataset["train"] = (
                dataset["train"].shuffle(seed=training_args.seed).select(range(data_args.max_train_samples))
            )
        # Set the training transforms
        dataset["train"].set_transform(train_transforms)

    if training_args.do_eval:
        if "validation" not in dataset:
            raise ValueError("--do_eval requires a validation dataset")
        if data_args.max_eval_samples is not None:
            dataset["validation"] = (
                dataset["validation"].shuffle(seed=training_args.seed).select(range(data_args.max_eval_samples))
            )
        # Set the validation transforms
        dataset["validation"].set_transform(val_transforms)

    early_stopping = EarlyStoppingCallback(
        early_stopping_patience=5,  # Number of evaluations to wait without improvement
        early_stopping_threshold=0.005,  # Minimum change to qualify as an improvement
    )

    # Initialize our trainer
    trainer = Trainer(
        model=model,
        args=training_args,
        train_dataset=dataset["train"] if training_args.do_train else None,
        eval_dataset=dataset["validation"] if training_args.do_eval else None,
        compute_metrics=compute_metrics,
        # tokenizer=image_processor,
        data_collator=collate_fn,
        callbacks=[early_stopping]  # Add your early stopping callback here
    )

    # Training
    if training_args.do_train:
        checkpoint = None
        if training_args.resume_from_checkpoint is not None:
            checkpoint = training_args.resume_from_checkpoint
        elif last_checkpoint is not None:
            checkpoint = last_checkpoint
        train_result = trainer.train(resume_from_checkpoint=checkpoint)
        trainer.save_model()
        trainer.log_metrics("train", train_result.metrics)
        trainer.save_metrics("train", train_result.metrics)
        trainer.save_state()

    # Evaluation
    if training_args.do_eval:
        metrics = trainer.evaluate()
        trainer.log_metrics("eval", metrics)
        trainer.save_metrics("eval", metrics)

    # Write model card and (optionally) push to hub
    kwargs = {
        "finetuned_from": model_args.model_name_or_path,
        "tasks": "image-classification",
        "dataset": data_args.dataset_name,
        "tags": ["image-classification", "vision"],
    }
    if training_args.push_to_hub:
        trainer.push_to_hub(**kwargs)
    else:
        trainer.create_model_card(**kwargs)


if __name__ == "__main__":
    main()