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Add an installation shell script for Linux/MacOS #51

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Add an installation shell script for Linux/MacOS #51

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@elliotfontaine elliotfontaine linked an issue Jul 24, 2024 that may be closed by this pull request
A bash install script for quick install of the project #35
Open
@elliotfontaine
only do tests on ubuntu-latest
44bfb8d
@elliotfontaine
run conda init after miniforge installation
6462b41
@elliotfontaine
run conda initeither way
361e0af
@elliotfontaine
source .bashrc for initialization to take effect
cf1d8a8
@elliotfontaine
use GitHub Action for proper conda setup
d0eed2a
@elliotfontaine
test conda activate base
0621bad
@elliotfontaine
simpler shell options
13b4ed9
@elliotfontaine
source conda.sh to fix "not initialized" bug
4db0e42
@elliotfontaine
add conda.shsourcing before our install script too
72b9461
@elliotfontaine
rewrite installer script
65cf385
@elliotfontaine
allow conda without shell session reload
45582cb
@elliotfontaine
fix two conda installed in github test environment
e6f18ee
@elliotfontaine
remove sourcing default conda from ubuntu-latest
67d4d61
@elliotfontaine
fix conda info in wrapper script setup
59b6acd
@elliotfontaine
use script lock
acf1694
@elliotfontaine
formatting (by shfmt)
fd3b084
@elliotfontaine
add extension recommendations for bash lint/format
4dd3552
@elliotfontaine
check for internet connexion
65bcb5d
@elliotfontaine
ask before installing conda
eb32156
@elliotfontaine
run miniforge install script inside an _execute_
ae5cbd1
@elliotfontaine
use execute everywhere
0d3c9d5
@elliotfontaine
add matrix logic to GHA for script flag options
f46c4e7
@elliotfontaine
attempt fixing matrix
b10b215
@elliotfontaine
remove --quiet
f19fce0
@elliotfontaine
fix --dryrun typo
782006f
@elliotfontaine
test simpler matrix
bae6ac8
@elliotfontaine
install tasks' conda environments
fc380ab
@elliotfontaine
attempt counting envs
7e54978
@elliotfontaine
check dryrun before tasks' envs installation
9b56530
@elliotfontaine
add interactive mode to test matrix
376a801
@elliotfontaine
check for root access and interactive guard
7a36dca
@elliotfontaine
show bashrc if interactive guard is found
4e8e615
@elliotfontaine
write wrapper script to ~/.local/bin if no root access
78195a3
@elliotfontaine
don't use _runAsRoot_ for now
b67d814
@elliotfontaine
try caching the installation
6af8a4b
@elliotfontaine
use caching
10aaa9f
@elliotfontaine
rewrite paths
63a9030
@elliotfontaine
fail if no cache found
f1ac233
@elliotfontaine
only cache envs/ in miniconda (not all the directory)
2da694f
@elliotfontaine
attempt at conda activate from restored cache
6585213
@elliotfontaine
force local installation of miniforge
a5f81f3
@elliotfontaine
don't fail fast
ffc0bc8
@elliotfontaine
fix dryrun
0d315e9
@elliotfontaine
fix _execute_ "${_condaCmd} info)"
13e8a46
@elliotfontaine
amend last change
83287fc
@elliotfontaine
try conda run instead of activate
5375d18
@elliotfontaine
give direct path to conda env
fd8b410
@elliotfontaine
test whole workflow
35a7bc7
@elliotfontaine
dont cylc validate before you cylc install you dum dum
a87af79
@elliotfontaine
fix typo
de09941
@elliotfontaine
fix copyting of raws
0104133
@elliotfontaine
force the use of our conda instead of the default one on GHA ubuntu r…
fca13e3 
…unner
@elliotfontaine
add binneR too
0dae61b
@elliotfontaine
use interactive shell
ba8c0f3
@elliotfontaine
detect CI context in install script
109bdb6
@elliotfontaine
don't try to install binner if in dryrun
4b1f087
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Successfully merging this pull request may close these issues.

A bash install script for quick install of the project
1 participant
@elliotfontaine