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requirements.txt
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requirements.txt
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alabaster==0.7.12
attrs==19.3.0
Babel==2.8.0
backcall==0.1.0
beautifulsoup4==4.8.2
biopython==1.76
bleach==3.1.4
certifi==2019.11.28
chardet==3.0.4
click==7.1.1
colorama==0.4.3
colorlog==4.1.0
cycler==0.10.0
Cython==0.29.14
dataclasses==0.7
decorator==4.4.1
defusedxml==0.6.0
docutils==0.16
dython==0.4.0
eli5==0.10.1
entrypoints==0.3
flake8==3.8.1
flake8-polyfill==1.0.2
future==0.18.2
gitdb2==2.0.6
GitPython==2.1.15
graphviz==0.14
GridDataFormats==0.5.0
gsd==1.10.0
hypothesis==5.3.1
idna==2.8
imagesize==1.2.0
imgkit==1.0.2
importlib-metadata==1.4.0
ipykernel==5.1.3
ipython==7.11.1
ipython-genutils==0.2.0
ipywidgets==7.5.1
jedi==0.15.2
Jinja2==2.10.3
joblib==0.14.1
jsonschema==3.2.0
jupyter==1.0.0
jupyter-client==5.3.4
jupyter-console==6.1.0
jupyter-contrib-core==0.3.3
jupyter-contrib-nbextensions==0.5.1
jupyter-core==4.6.1
jupyter-highlight-selected-word==0.2.0
jupyter-latex-envs==1.4.6
jupyter-nbextensions-configurator==0.4.1
kiwisolver==1.1.0
lxml==4.6.2
mando==0.6.4
MarkupSafe==1.1.1
matplotlib==3.1.2
mccabe==0.6.1
MDAnalysis==0.20.1
MDAnalysisData==0.8.0
MDAnalysisTests==0.20.1
-e git+https://github.com/MikeXydas/Bioinformatics_Thesis.git@a95d5a75184c05f8c21051a2f6ac3c3ebe2ce665#egg=MDSimsEval
mdtraj==1.9.3
mistune==0.8.4
mmtf-python==1.1.2
mock==3.0.5
more-itertools==8.1.0
msgpack==0.6.2
nbconvert==5.6.1
nbformat==4.4.0
networkx==2.4
nltk==3.5
nose==1.3.7
notebook==6.0.3
numpy==1.18.1
opencv-python==4.2.0.32
packaging==20.1
pandas==1.0.3
pandocfilters==1.4.2
parso==0.5.2
patsy==0.5.1
pexpect==4.8.0
pickleshare==0.7.5
Pillow==7.1.1
pkg-resources==0.0.0
plotly==4.7.1
pluggy==0.13.1
progress==1.4
prometheus-client==0.7.1
prompt-toolkit==3.0.2
psutil==5.6.7
ptyprocess==0.6.0
py==1.8.1
pycodestyle==2.6.0
pyflakes==2.2.0
Pygments==2.5.2
pyparsing==2.4.6
pyrsistent==0.15.7
pytest==5.3.4
python-dateutil==2.8.1
pytz==2019.3
PyYAML==5.3
pyzmq==18.1.1
qtconsole==4.7.1
QtPy==1.9.0
radon==4.0.0
regex==2020.4.4
requests==2.22.0
retrying==1.3.3
scikit-learn==0.22.1
scipy==1.4.1
seaborn==0.10.0
Send2Trash==1.5.0
six==1.13.0
smmap==3.0.4
smmap2==3.0.1
snowballstemmer==2.0.0
sortedcontainers==2.1.0
soupsieve==1.9.5
Sphinx==3.0.3
sphinx-rtd-theme==0.4.3
sphinxcontrib-applehelp==1.0.2
sphinxcontrib-devhelp==1.0.2
sphinxcontrib-htmlhelp==1.0.3
sphinxcontrib-jsmath==1.0.1
sphinxcontrib-qthelp==1.0.3
sphinxcontrib-serializinghtml==1.1.4
statsmodels==0.11.1
tabulate==0.8.7
terminado==0.8.3
testpath==0.4.4
tornado==6.0.3
tqdm==4.42.0
traitlets==4.3.3
urllib3==1.25.7
wcwidth==0.1.8
webencodings==0.5.1
widgetsnbextension==3.5.1
wily==1.16.0
wordcloud==1.6.0
xlrd==1.2.0
zipp==2.0.0