README.md

Testing the drivers of the stratigraphic architecture

Purpose

A repository to develop a workflow linking Matlab and R to generate and analyse a large number of simulations.

Steps to run the workflow

Install iBridges

pip install ibridges

Setup and check iBridges installation

ibridges init

Install SnakeMake iRODS/iBridges plugin

The ibridges/snakemake plugin needs to installed from a branch in a fork:

pip install git+https://github.com/qubixes/snakemake-storage-plugin-irods.git@switch-to-ibridges

Run the workflow

snakemake --cores all

Authors

Scientific contents:

Emilia Jarochowska
Utrecht University
email: e.b.jarochowska [at] uu.nl
Web page: www.uu.nl/staff/EBJarochowska
ORCID: 0000-0001-8937-9405

Niklas Hohmann
Utrecht University
email: n.h.hohmann [at] uu.nl
Web page: www.uu.nl/staff/NHohmann
ORCID: 0000-0003-1559-1838

Xianyi Liu
Utrecht University
email: x.liu6 [at] uu.nl
Web page: www.uu.nl/staff/XLiu6
ORCID: 0000-0002-3851-116X

Peter Burgess
University of Liverpool
Web page: www.liverpool.ac.uk/environmental-sciences/staff/peter-burgess
ORCID: 0000-0002-3812-4231

David De Vleeschouwer
Westfälische Wilhelms-Universität Münster
Web page: www.uni-muenster.de/GeoPalaeontologie/erdsystemforschung/staff/DeVleeschouwer
ORCID: 0000-0002-3323-807X

Copyright

Copyright 2024 Netherlands eScience Center and Utrecht University

License

Apache 2.0 License, see LICENSE file for license text.

Funding information

Funded by the European Union (ERC, MindTheGap, StG project no 101041077). Views and opinions expressed are however those of the author(s) only and do not necessarily reflect those of the European Union or the European Research Council. Neither the European Union nor the granting authority can be held responsible for them.