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DESCRIPTION
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DESCRIPTION
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Package: DIGREsyn
Type: Package
Title: Drug Induced Genomic Residual Effect (DIGRE) model for predicting drug pair synergistic score
Version: 0.2.0
Date: 2016-10-7
Author: Jicheng Yang, Sangin Lee, Minzhe Zhang
Maintainer: Minzhe Zhang <[email protected]>
Description: DIGREsyn is developed to predict drug pair synergism/antagonism using Drug Induced Genomic Residual Effect (DIGRE) model. DIGRE utilize drug perturbated cell gene expression profile (GEP), drug dose response curve (DRC) and gene regulatory network (GRN) information (KEGG pathway database or self-provided) to do the prediction, and output the rank of drug pairs from most synergistic to most antagnoistic.
Imports: preprocessCore, KEGGgraph, org.Hs.eg.db, AnnotationDbi, BiocGenerics, ggplot2
License: GPL-3
LazyData: TRUE
RoxygenNote: 6.0.1
Suggests: knitr, rmarkdown
VignetteBuilder: knitr