spkplt2.hoc

// spkplt2.hoc modified from spkplt.hoc from Traub et al. 2005 NEURON model
// Tom Morse 
load_file("nrngui.hoc")

objref grspk

// set sizes so can run without main program
proc setVars() {
  numSTN=10
  numGPe=30
  numGPi=10
}

// pass the below the data file name as a string as the first argument
// and the graph object as the second argument

proc spkplt2() {local i, color localobj x1, y1, x2, y2, x3, y3
	clipboard_retrieve($s1)
	printf("read %d spikes\n", hoc_obj_[1].size)
	x1= new Vector()
	y1= new Vector()
	x2= new Vector()
	y2= new Vector()
	x3= new Vector()
	y3= new Vector()
	color=1
	for i=0, hoc_obj_[1].size()-1 {
	  if ((hoc_obj_[0].x[i] >= numGPi) && (hoc_obj_[0].x[i] < numGPi+numGPe)) {
	    x2.append(hoc_obj_[1].x[i])
	    y2.append(hoc_obj_[0].x[i])
	  } else if (hoc_obj_[0].x[i] >= numGPi+numGPe) {
	    x3.append(hoc_obj_[1].x[i])
	    y3.append(hoc_obj_[0].x[i])
	  } else {
	    x1.append(hoc_obj_[1].x[i])
	    y1.append(hoc_obj_[0].x[i])
	  }
	}
	$o2.size(x1.min, x3.max, y1.min, y3.max)

	y1.mark($o2, x1, "|", 5, 3, 4)
	y2.mark($o2, x2, "|", 5, 4, 4)
	y3.mark($o2, x3, "|", 5, 2, 4)
}

// sample use : spkplt2("../p2c/data/out.dat")
// use if want to run without main program (just use data files): setVars()
// normal use
// grspk = new Graph()
// spkplt2("spikes000.txt", grspk)