From d191850995ce2da5771759096b41c758e9575f0c Mon Sep 17 00:00:00 2001
From: kpzn768 <kpzn768@wks-3f33f0.seml.astrazeneca.net>
Date: Wed, 4 Dec 2024 16:29:47 +0100
Subject: [PATCH 1/3] Update dependencies

---
 aizynthfinder/interfaces/gui/__init__.py |    3 +-
 poetry.lock                              | 5256 +++++++++++++---------
 pyproject.toml                           |   21 +-
 3 files changed, 3102 insertions(+), 2178 deletions(-)

diff --git a/aizynthfinder/interfaces/gui/__init__.py b/aizynthfinder/interfaces/gui/__init__.py
index f38ff8c..b708929 100644
--- a/aizynthfinder/interfaces/gui/__init__.py
+++ b/aizynthfinder/interfaces/gui/__init__.py
@@ -1,3 +1,2 @@
 """ Package for GUI extensions
-"""
-from .clustering import ClusteringGui  # noqa
+"""
\ No newline at end of file
diff --git a/poetry.lock b/poetry.lock
index e976b71..332f5e8 100644
--- a/poetry.lock
+++ b/poetry.lock
@@ -12,102 +12,116 @@ files = [
     {file = "absl_py-2.1.0-py3-none-any.whl", hash = "sha256:526a04eadab8b4ee719ce68f204172ead1027549089702d99b9059f129ff1308"},
 ]
 
+[[package]]
+name = "aiohappyeyeballs"
+version = "2.4.4"
+description = "Happy Eyeballs for asyncio"
+category = "main"
+optional = true
+python-versions = ">=3.8"
+files = [
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+    {file = "aiohappyeyeballs-2.4.4.tar.gz", hash = "sha256:5fdd7d87889c63183afc18ce9271f9b0a7d32c2303e394468dd45d514a757745"},
+]
+
 [[package]]
 name = "aiohttp"
-version = "3.9.5"
+version = "3.11.9"
 description = "Async http client/server framework (asyncio)"
 category = "main"
 optional = true
-python-versions = ">=3.8"
+python-versions = ">=3.9"
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+    {file = "aiohttp-3.11.9.tar.gz", hash = "sha256:a9266644064779840feec0e34f10a89b3ff1d2d6b751fe90017abcad1864fa7c"},
 ]
 
 [package.dependencies]
+aiohappyeyeballs = ">=2.3.0"
 aiosignal = ">=1.1.2"
-async-timeout = {version = ">=4.0,<5.0", markers = "python_version < \"3.11\""}
+async-timeout = {version = ">=4.0,<6.0", markers = "python_version < \"3.11\""}
 attrs = ">=17.3.0"
 frozenlist = ">=1.1.1"
 multidict = ">=4.5,<7.0"
-yarl = ">=1.0,<2.0"
+propcache = ">=0.2.0"
+yarl = ">=1.17.0,<2.0"
 
 [package.extras]
-speedups = ["Brotli", "aiodns", "brotlicffi"]
+speedups = ["Brotli", "aiodns (>=3.2.0)", "brotlicffi"]
 
 [[package]]
 name = "aiosignal"
@@ -128,7 +142,7 @@ frozenlist = ">=1.1.0"
 name = "alabaster"
 version = "0.7.16"
 description = "A light, configurable Sphinx theme"
-category = "dev"
+category = "main"
 optional = false
 python-versions = ">=3.9"
 files = [
@@ -138,14 +152,14 @@ files = [
 
 [[package]]
 name = "alembic"
-version = "1.13.1"
+version = "1.14.0"
 description = "A database migration tool for SQLAlchemy."
 category = "main"
 optional = true
 python-versions = ">=3.8"
 files = [
-    {file = "alembic-1.13.1-py3-none-any.whl", hash = "sha256:2edcc97bed0bd3272611ce3a98d98279e9c209e7186e43e75bbb1b2bdfdbcc43"},
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+    {file = "alembic-1.14.0-py3-none-any.whl", hash = "sha256:99bd884ca390466db5e27ffccff1d179ec5c05c965cfefc0607e69f9e411cb25"},
+    {file = "alembic-1.14.0.tar.gz", hash = "sha256:b00892b53b3642d0b8dbedba234dbf1924b69be83a9a769d5a624b01094e304b"},
 ]
 
 [package.dependencies]
@@ -156,16 +170,28 @@ typing-extensions = ">=4"
 [package.extras]
 tz = ["backports.zoneinfo"]
 
+[[package]]
+name = "annotated-types"
+version = "0.7.0"
+description = "Reusable constraint types to use with typing.Annotated"
+category = "main"
+optional = true
+python-versions = ">=3.8"
+files = [
+    {file = "annotated_types-0.7.0-py3-none-any.whl", hash = "sha256:1f02e8b43a8fbbc3f3e0d4f0f4bfc8131bcb4eebe8849b8e5c773f3a1c582a53"},
+    {file = "annotated_types-0.7.0.tar.gz", hash = "sha256:aff07c09a53a08bc8cfccb9c85b05f1aa9a2a6f23728d790723543408344ce89"},
+]
+
 [[package]]
 name = "anyio"
-version = "4.3.0"
+version = "4.6.2.post1"
 description = "High level compatibility layer for multiple asynchronous event loop implementations"
 category = "main"
 optional = false
-python-versions = ">=3.8"
+python-versions = ">=3.9"
 files = [
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+    {file = "anyio-4.6.2.post1-py3-none-any.whl", hash = "sha256:6d170c36fba3bdd840c73d3868c1e777e33676a69c3a72cf0a0d5d6d8009b61d"},
+    {file = "anyio-4.6.2.post1.tar.gz", hash = "sha256:4c8bc31ccdb51c7f7bd251f51c609e038d63e34219b44aa86e47576389880b4c"},
 ]
 
 [package.dependencies]
@@ -175,9 +201,9 @@ sniffio = ">=1.1"
 typing-extensions = {version = ">=4.1", markers = "python_version < \"3.11\""}
 
 [package.extras]
-doc = ["Sphinx (>=7)", "packaging", "sphinx-autodoc-typehints (>=1.2.0)", "sphinx-rtd-theme"]
-test = ["anyio[trio]", "coverage[toml] (>=7)", "exceptiongroup (>=1.2.0)", "hypothesis (>=4.0)", "psutil (>=5.9)", "pytest (>=7.0)", "pytest-mock (>=3.6.1)", "trustme", "uvloop (>=0.17)"]
-trio = ["trio (>=0.23)"]
+doc = ["Sphinx (>=7.4,<8.0)", "packaging", "sphinx-autodoc-typehints (>=1.2.0)", "sphinx-rtd-theme"]
+test = ["anyio[trio]", "coverage[toml] (>=7)", "exceptiongroup (>=1.2.0)", "hypothesis (>=4.0)", "psutil (>=5.9)", "pytest (>=7.0)", "pytest-mock (>=3.6.1)", "trustme", "truststore (>=0.9.1)", "uvloop (>=0.21.0b1)"]
+trio = ["trio (>=0.26.1)"]
 
 [[package]]
 name = "appnope"
@@ -301,22 +327,19 @@ wrapt = {version = ">=1.11,<2", markers = "python_version < \"3.11\""}
 
 [[package]]
 name = "asttokens"
-version = "2.4.1"
+version = "3.0.0"
 description = "Annotate AST trees with source code positions"
 category = "main"
 optional = false
-python-versions = "*"
+python-versions = ">=3.8"
 files = [
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-    {file = "asttokens-2.4.1.tar.gz", hash = "sha256:b03869718ba9a6eb027e134bfdf69f38a236d681c83c160d510768af11254ba0"},
+    {file = "asttokens-3.0.0-py3-none-any.whl", hash = "sha256:e3078351a059199dd5138cb1c706e6430c05eff2ff136af5eb4790f9d28932e2"},
+    {file = "asttokens-3.0.0.tar.gz", hash = "sha256:0dcd8baa8d62b0c1d118b399b2ddba3c4aff271d0d7a9e0d4c1681c79035bbc7"},
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-[package.dependencies]
-six = ">=1.12.0"
-
 [package.extras]
-astroid = ["astroid (>=1,<2)", "astroid (>=2,<4)"]
-test = ["astroid (>=1,<2)", "astroid (>=2,<4)", "pytest"]
+astroid = ["astroid (>=2,<4)"]
+test = ["astroid (>=2,<4)", "pytest", "pytest-cov", "pytest-xdist"]
 
 [[package]]
 name = "astunparse"
@@ -334,23 +357,38 @@ files = [
 six = ">=1.6.1,<2.0"
 wheel = ">=0.23.0,<1.0"
 
+[[package]]
+name = "async-lru"
+version = "2.0.4"
+description = "Simple LRU cache for asyncio"
+category = "main"
+optional = false
+python-versions = ">=3.8"
+files = [
+    {file = "async-lru-2.0.4.tar.gz", hash = "sha256:b8a59a5df60805ff63220b2a0c5b5393da5521b113cd5465a44eb037d81a5627"},
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+]
+
+[package.dependencies]
+typing-extensions = {version = ">=4.0.0", markers = "python_version < \"3.11\""}
+
 [[package]]
 name = "async-timeout"
-version = "4.0.3"
+version = "5.0.1"
 description = "Timeout context manager for asyncio programs"
 category = "main"
 optional = true
-python-versions = ">=3.7"
+python-versions = ">=3.8"
 files = [
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 ]
 
 [[package]]
 name = "atomicwrites"
 version = "1.4.1"
 description = "Atomic file writes."
-category = "dev"
+category = "main"
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
 files = [
@@ -359,23 +397,23 @@ files = [
 
 [[package]]
 name = "attrs"
-version = "23.2.0"
+version = "24.2.0"
 description = "Classes Without Boilerplate"
 category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
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-cov = ["attrs[tests]", "coverage[toml] (>=5.3)"]
-dev = ["attrs[tests]", "pre-commit"]
-docs = ["furo", "myst-parser", "sphinx", "sphinx-notfound-page", "sphinxcontrib-towncrier", "towncrier", "zope-interface"]
-tests = ["attrs[tests-no-zope]", "zope-interface"]
-tests-mypy = ["mypy (>=1.6)", "pytest-mypy-plugins"]
-tests-no-zope = ["attrs[tests-mypy]", "cloudpickle", "hypothesis", "pympler", "pytest (>=4.3.0)", "pytest-xdist[psutil]"]
+benchmark = ["cloudpickle", "hypothesis", "mypy (>=1.11.1)", "pympler", "pytest (>=4.3.0)", "pytest-codspeed", "pytest-mypy-plugins", "pytest-xdist[psutil]"]
+cov = ["cloudpickle", "coverage[toml] (>=5.3)", "hypothesis", "mypy (>=1.11.1)", "pympler", "pytest (>=4.3.0)", "pytest-mypy-plugins", "pytest-xdist[psutil]"]
+dev = ["cloudpickle", "hypothesis", "mypy (>=1.11.1)", "pre-commit", "pympler", "pytest (>=4.3.0)", "pytest-mypy-plugins", "pytest-xdist[psutil]"]
+docs = ["cogapp", "furo", "myst-parser", "sphinx", "sphinx-notfound-page", "sphinxcontrib-towncrier", "towncrier (<24.7)"]
+tests = ["cloudpickle", "hypothesis", "mypy (>=1.11.1)", "pympler", "pytest (>=4.3.0)", "pytest-mypy-plugins", "pytest-xdist[psutil]"]
+tests-mypy = ["mypy (>=1.11.1)", "pytest-mypy-plugins"]
 
 [[package]]
 name = "autopage"
@@ -391,14 +429,14 @@ files = [
 
 [[package]]
 name = "babel"
-version = "2.15.0"
+version = "2.16.0"
 description = "Internationalization utilities"
-category = "dev"
+category = "main"
 optional = false
 python-versions = ">=3.8"
 files = [
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 ]
 
 [package.extras]
@@ -430,7 +468,7 @@ lxml = ["lxml"]
 name = "black"
 version = "22.12.0"
 description = "The uncompromising code formatter."
-category = "dev"
+category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -464,22 +502,21 @@ uvloop = ["uvloop (>=0.15.2)"]
 
 [[package]]
 name = "bleach"
-version = "6.1.0"
+version = "6.2.0"
 description = "An easy safelist-based HTML-sanitizing tool."
 category = "main"
 optional = false
-python-versions = ">=3.8"
+python-versions = ">=3.9"
 files = [
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 [package.dependencies]
-six = ">=1.9.0"
 webencodings = "*"
 
 [package.extras]
-css = ["tinycss2 (>=1.1.0,<1.3)"]
+css = ["tinycss2 (>=1.1.0,<1.5)"]
 
 [[package]]
 name = "blosc2"
@@ -528,76 +565,91 @@ py-cpuinfo = "*"
 
 [[package]]
 name = "certifi"
-version = "2024.2.2"
+version = "2024.8.30"
 description = "Python package for providing Mozilla's CA Bundle."
 category = "main"
 optional = false
 python-versions = ">=3.6"
 files = [
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 ]
 
 [[package]]
 name = "cffi"
-version = "1.16.0"
+version = "1.17.1"
 description = "Foreign Function Interface for Python calling C code."
 category = "main"
 optional = false
 python-versions = ">=3.8"
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 [package.dependencies]
@@ -605,109 +657,124 @@ pycparser = "*"
 
 [[package]]
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 ]
 
 [[package]]
 name = "click"
 version = "8.1.7"
 description = "Composable command line interface toolkit"
-category = "dev"
+category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -720,14 +787,14 @@ colorama = {version = "*", markers = "platform_system == \"Windows\""}
 
 [[package]]
 name = "cliff"
-version = "4.7.0"
+version = "4.8.0"
 description = "Command Line Interface Formulation Framework"
 category = "main"
 optional = true
-python-versions = ">=3.8"
+python-versions = ">=3.9"
 files = [
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+    {file = "cliff-4.8.0.tar.gz", hash = "sha256:23eff502e603cf0aa841eaea6662a42cd3064169162b3e596b20226400e34dfd"},
 ]
 
 [package.dependencies]
@@ -740,14 +807,14 @@ stevedore = ">=2.0.1"
 
 [[package]]
 name = "cmaes"
-version = "0.10.0"
+version = "0.11.1"
 description = "Lightweight Covariance Matrix Adaptation Evolution Strategy (CMA-ES) implementation for Python 3."
 category = "main"
 optional = true
 python-versions = ">=3.7"
 files = [
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+    {file = "cmaes-0.11.1-py3-none-any.whl", hash = "sha256:1de77d2175045389680619c1e9b6d59d90e7888524d9e440e1704ba001de9fcc"},
+    {file = "cmaes-0.11.1.tar.gz", hash = "sha256:cf71fa3679814723be771f2c9edd85f465b1bc1e409e1ad6d8a9e481efcd5160"},
 ]
 
 [package.dependencies]
@@ -758,26 +825,28 @@ cmawm = ["scipy"]
 
 [[package]]
 name = "cmd2"
-version = "2.4.3"
+version = "2.5.7"
 description = "cmd2 - quickly build feature-rich and user-friendly interactive command line applications in Python"
 category = "main"
 optional = true
-python-versions = ">=3.6"
+python-versions = ">=3.8"
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+    {file = "cmd2-2.5.7.tar.gz", hash = "sha256:0219e2bb75075fa16deffb88edf86efdd2a87439d1fa7b94fdea4b929a3dc914"},
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-pyperclip = ">=1.6"
-pyreadline3 = {version = "*", markers = "sys_platform == \"win32\""}
-wcwidth = ">=0.1.7"
+gnureadline = {version = "*", markers = "platform_system == \"Darwin\""}
+pyperclip = "*"
+pyreadline3 = {version = "*", markers = "platform_system == \"Windows\""}
+wcwidth = "*"
 
 [package.extras]
-dev = ["codecov", "doc8", "flake8", "invoke", "mypy", "nox", "pytest (>=4.6)", "pytest-cov", "pytest-mock", "sphinx", "sphinx-autobuild", "sphinx-rtd-theme", "twine (>=1.11)"]
-test = ["codecov", "coverage", "gnureadline", "pytest (>=4.6)", "pytest-cov", "pytest-mock"]
-validate = ["flake8", "mypy", "types-pkg-resources"]
+build = ["build", "setuptools", "setuptools-scm"]
+dev = ["codecov", "doc8", "invoke", "mypy", "pytest", "pytest-cov", "pytest-mock", "ruff", "sphinx", "sphinx-autobuild", "sphinx-rtd-theme", "twine"]
+docs = ["setuptools", "setuptools_scm", "sphinx", "sphinx-autobuild", "sphinx-rtd-theme"]
+test = ["codecov", "coverage", "pytest", "pytest-cov", "pytest-mock"]
+validate = ["mypy", "ruff", "types-setuptools"]
 
 [[package]]
 name = "colorama"
@@ -811,14 +880,14 @@ cron = ["capturer (>=2.4)"]
 
 [[package]]
 name = "colorlog"
-version = "6.8.2"
+version = "6.9.0"
 description = "Add colours to the output of Python's logging module."
 category = "main"
 optional = true
 python-versions = ">=3.6"
 files = [
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 ]
 
 [package.dependencies]
@@ -845,130 +914,176 @@ traitlets = ">=4"
 [package.extras]
 test = ["pytest"]
 
+[[package]]
+name = "commonmark"
+version = "0.9.1"
+description = "Python parser for the CommonMark Markdown spec"
+category = "main"
+optional = false
+python-versions = "*"
+files = [
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+    {file = "commonmark-0.9.1.tar.gz", hash = "sha256:452f9dc859be7f06631ddcb328b6919c67984aca654e5fefb3914d54691aed60"},
+]
+
+[package.extras]
+test = ["flake8 (==3.7.8)", "hypothesis (==3.55.3)"]
+
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-version = "1.2.1"
+version = "1.3.0"
 description = "Python library for calculating contours of 2D quadrilateral grids"
 category = "main"
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 python-versions = ">=3.9"
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 [[package]]
@@ -1048,32 +1167,32 @@ files = [
 
 [[package]]
 name = "deprecated"
-version = "1.2.14"
+version = "1.2.15"
 description = "Python @deprecated decorator to deprecate old python classes, functions or methods."
 category = "main"
 optional = false
-python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
+python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,>=2.7"
 files = [
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 [package.dependencies]
 wrapt = ">=1.10,<2"
 
 [package.extras]
-dev = ["PyTest", "PyTest-Cov", "bump2version (<1)", "sphinx (<2)", "tox"]
+dev = ["PyTest", "PyTest-Cov", "bump2version (<1)", "jinja2 (>=3.0.3,<3.1.0)", "setuptools", "sphinx (<2)", "tox"]
 
 [[package]]
 name = "dill"
-version = "0.3.8"
+version = "0.3.9"
 description = "serialize all of Python"
 category = "dev"
 optional = false
 python-versions = ">=3.8"
 files = [
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 ]
 
 [package.extras]
@@ -1082,14 +1201,14 @@ profile = ["gprof2dot (>=2022.7.29)"]
 
 [[package]]
 name = "docutils"
-version = "0.21.2"
+version = "0.17.1"
 description = "Docutils -- Python Documentation Utilities"
-category = "dev"
+category = "main"
 optional = false
-python-versions = ">=3.9"
+python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*"
 files = [
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 ]
 
 [[package]]
@@ -1106,14 +1225,14 @@ files = [
 
 [[package]]
 name = "exceptiongroup"
-version = "1.2.1"
+version = "1.2.2"
 description = "Backport of PEP 654 (exception groups)"
 category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
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 ]
 
 [package.extras]
@@ -1121,14 +1240,14 @@ test = ["pytest (>=6)"]
 
 [[package]]
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+version = "2.1.0"
 description = "Get the currently executing AST node of a frame, and other information"
 category = "main"
 optional = false
-python-versions = ">=3.5"
+python-versions = ">=3.8"
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 [package.extras]
@@ -1136,14 +1255,14 @@ tests = ["asttokens (>=2.1.0)", "coverage", "coverage-enable-subprocess", "ipyth
 
 [[package]]
 name = "fastjsonschema"
-version = "2.19.1"
+version = "2.21.1"
 description = "Fastest Python implementation of JSON schema"
 category = "main"
 optional = false
 python-versions = "*"
 files = [
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 [package.extras]
@@ -1151,19 +1270,35 @@ devel = ["colorama", "json-spec", "jsonschema", "pylint", "pytest", "pytest-benc
 
 [[package]]
 name = "fire"
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 python-versions = "*"
 files = [
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 [package.dependencies]
-six = "*"
 termcolor = "*"
 
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+name = "flake8"
+version = "7.1.1"
+description = "the modular source code checker: pep8 pyflakes and co"
+category = "main"
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+pycodestyle = ">=2.12.0,<2.13.0"
+pyflakes = ">=3.2.0,<3.3.0"
+
 [[package]]
 name = "flatbuffers"
 version = "24.3.25"
@@ -1178,54 +1313,62 @@ files = [
 
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+version = "4.55.1"
 description = "Tools to manipulate font files"
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 [package.dependencies]
@@ -1362,6 +1520,7 @@ adl = ["adlfs"]
 arrow = ["pyarrow (>=1)"]
 dask = ["dask", "distributed"]
 dev = ["pre-commit", "ruff"]
+doc = ["numpydoc", "sphinx", "sphinx-design", "sphinx-rtd-theme", "yarl"]
 dropbox = ["dropbox", "dropboxdrivefs", "requests"]
 full = ["adlfs", "aiohttp (!=4.0.0a0,!=4.0.0a1)", "dask", "distributed", "dropbox", "dropboxdrivefs", "fusepy", "gcsfs", "libarchive-c", "ocifs", "panel", "paramiko", "pyarrow (>=1)", "pygit2", "requests", "s3fs", "smbprotocol", "tqdm"]
 fuse = ["fusepy"]
@@ -1385,14 +1544,54 @@ tqdm = ["tqdm"]
 
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 [[package]]
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 [package.extras]
@@ -1485,96 +1699,169 @@ test = ["objgraph", "psutil"]
 
 [[package]]
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-    {file = "h5py-3.11.0-cp38-cp38-macosx_11_0_arm64.whl", hash = "sha256:731839240c59ba219d4cb3bc5880d438248533366f102402cfa0621b71796b62"},
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-    {file = "h5py-3.11.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:67462d0669f8f5459529de179f7771bd697389fcb3faab54d63bf788599a48ea"},
-    {file = "h5py-3.11.0-cp39-cp39-win_amd64.whl", hash = "sha256:d9c944d364688f827dc889cf83f1fca311caf4fa50b19f009d1f2b525edd33a3"},
-    {file = "h5py-3.11.0.tar.gz", hash = "sha256:7b7e8f78072a2edec87c9836f25f34203fd492a4475709a18b417a33cfb21fa9"},
-]
-
-[package.dependencies]
-numpy = ">=1.17.3"
+    {file = "httpcore-1.0.7-py3-none-any.whl", hash = "sha256:a3fff8f43dc260d5bd363d9f9cf1830fa3a458b332856f34282de498ed420edd"},
+    {file = "httpcore-1.0.7.tar.gz", hash = "sha256:8551cb62a169ec7162ac7be8d4817d561f60e08eaa485234898414bb5a8a0b4c"},
+]
+
+[package.dependencies]
+certifi = "*"
+h11 = ">=0.13,<0.15"
+
+[package.extras]
+asyncio = ["anyio (>=4.0,<5.0)"]
+http2 = ["h2 (>=3,<5)"]
+socks = ["socksio (>=1.0.0,<2.0.0)"]
+trio = ["trio (>=0.22.0,<1.0)"]
+
+[[package]]
+name = "httpx"
+version = "0.28.0"
+description = "The next generation HTTP client."
+category = "main"
+optional = false
+python-versions = ">=3.8"
+files = [
+    {file = "httpx-0.28.0-py3-none-any.whl", hash = "sha256:dc0b419a0cfeb6e8b34e85167c0da2671206f5095f1baa9663d23bcfd6b535fc"},
+    {file = "httpx-0.28.0.tar.gz", hash = "sha256:0858d3bab51ba7e386637f22a61d8ccddaeec5f3fe4209da3a6168dbb91573e0"},
+]
+
+[package.dependencies]
+anyio = "*"
+certifi = "*"
+httpcore = ">=1.0.0,<2.0.0"
+idna = "*"
+
+[package.extras]
+brotli = ["brotli", "brotlicffi"]
+cli = ["click (>=8.0.0,<9.0.0)", "pygments (>=2.0.0,<3.0.0)", "rich (>=10,<14)"]
+http2 = ["h2 (>=3,<5)"]
+socks = ["socksio (>=1.0.0,<2.0.0)"]
+zstd = ["zstandard (>=0.18.0)"]
 
 [[package]]
 name = "humanfriendly"
@@ -1593,21 +1880,24 @@ pyreadline3 = {version = "*", markers = "sys_platform == \"win32\" and python_ve
 
 [[package]]
 name = "idna"
-version = "3.7"
+version = "3.10"
 description = "Internationalized Domain Names in Applications (IDNA)"
 category = "main"
 optional = false
-python-versions = ">=3.5"
+python-versions = ">=3.6"
 files = [
-    {file = "idna-3.7-py3-none-any.whl", hash = "sha256:82fee1fc78add43492d3a1898bfa6d8a904cc97d8427f683ed8e798d07761aa0"},
-    {file = "idna-3.7.tar.gz", hash = "sha256:028ff3aadf0609c1fd278d8ea3089299412a7a8b9bd005dd08b9f8285bcb5cfc"},
+    {file = "idna-3.10-py3-none-any.whl", hash = "sha256:946d195a0d259cbba61165e88e65941f16e9b36ea6ddb97f00452bae8b1287d3"},
+    {file = "idna-3.10.tar.gz", hash = "sha256:12f65c9b470abda6dc35cf8e63cc574b1c52b11df2c86030af0ac09b01b13ea9"},
 ]
 
+[package.extras]
+all = ["flake8 (>=7.1.1)", "mypy (>=1.11.2)", "pytest (>=8.3.2)", "ruff (>=0.6.2)"]
+
 [[package]]
 name = "imagesize"
 version = "1.4.1"
 description = "Getting image size from png/jpeg/jpeg2000/gif file"
-category = "dev"
+category = "main"
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
 files = [
@@ -1617,48 +1907,56 @@ files = [
 
 [[package]]
 name = "importlib-metadata"
-version = "7.1.0"
+version = "8.5.0"
 description = "Read metadata from Python packages"
 category = "main"
 optional = false
 python-versions = ">=3.8"
 files = [
-    {file = "importlib_metadata-7.1.0-py3-none-any.whl", hash = "sha256:30962b96c0c223483ed6cc7280e7f0199feb01a0e40cfae4d4450fc6fab1f570"},
-    {file = "importlib_metadata-7.1.0.tar.gz", hash = "sha256:b78938b926ee8d5f020fc4772d487045805a55ddbad2ecf21c6d60938dc7fcd2"},
+    {file = "importlib_metadata-8.5.0-py3-none-any.whl", hash = "sha256:45e54197d28b7a7f1559e60b95e7c567032b602131fbd588f1497f47880aa68b"},
+    {file = "importlib_metadata-8.5.0.tar.gz", hash = "sha256:71522656f0abace1d072b9e5481a48f07c138e00f079c38c8f883823f9c26bd7"},
 ]
 
 [package.dependencies]
-zipp = ">=0.5"
+zipp = ">=3.20"
 
 [package.extras]
-docs = ["furo", "jaraco.packaging (>=9.3)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (>=3.5)", "sphinx-lint"]
+check = ["pytest-checkdocs (>=2.4)", "pytest-ruff (>=0.2.1)"]
+cover = ["pytest-cov"]
+doc = ["furo", "jaraco.packaging (>=9.3)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (>=3.5)", "sphinx-lint"]
+enabler = ["pytest-enabler (>=2.2)"]
 perf = ["ipython"]
-testing = ["flufl.flake8", "importlib-resources (>=1.3)", "jaraco.test (>=5.4)", "packaging", "pyfakefs", "pytest (>=6)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=2.2)", "pytest-mypy", "pytest-perf (>=0.9.2)", "pytest-ruff (>=0.2.1)"]
+test = ["flufl.flake8", "importlib-resources (>=1.3)", "jaraco.test (>=5.4)", "packaging", "pyfakefs", "pytest (>=6,!=8.1.*)", "pytest-perf (>=0.9.2)"]
+type = ["pytest-mypy"]
 
 [[package]]
 name = "importlib-resources"
-version = "6.4.0"
+version = "6.4.5"
 description = "Read resources from Python packages"
 category = "main"
 optional = false
 python-versions = ">=3.8"
 files = [
-    {file = "importlib_resources-6.4.0-py3-none-any.whl", hash = "sha256:50d10f043df931902d4194ea07ec57960f66a80449ff867bfe782b4c486ba78c"},
-    {file = "importlib_resources-6.4.0.tar.gz", hash = "sha256:cdb2b453b8046ca4e3798eb1d84f3cce1446a0e8e7b5ef4efb600f19fc398145"},
+    {file = "importlib_resources-6.4.5-py3-none-any.whl", hash = "sha256:ac29d5f956f01d5e4bb63102a5a19957f1b9175e45649977264a1416783bb717"},
+    {file = "importlib_resources-6.4.5.tar.gz", hash = "sha256:980862a1d16c9e147a59603677fa2aa5fd82b87f223b6cb870695bcfce830065"},
 ]
 
 [package.dependencies]
 zipp = {version = ">=3.1.0", markers = "python_version < \"3.10\""}
 
 [package.extras]
-docs = ["furo", "jaraco.packaging (>=9.3)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (<7.2.5)", "sphinx (>=3.5)", "sphinx-lint"]
-testing = ["jaraco.test (>=5.4)", "pytest (>=6)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=2.2)", "pytest-mypy", "pytest-ruff (>=0.2.1)", "zipp (>=3.17)"]
+check = ["pytest-checkdocs (>=2.4)", "pytest-ruff (>=0.2.1)"]
+cover = ["pytest-cov"]
+doc = ["furo", "jaraco.packaging (>=9.3)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (>=3.5)", "sphinx-lint"]
+enabler = ["pytest-enabler (>=2.2)"]
+test = ["jaraco.test (>=5.4)", "pytest (>=6,!=8.1.*)", "zipp (>=3.17)"]
+type = ["pytest-mypy"]
 
 [[package]]
 name = "iniconfig"
 version = "2.0.0"
 description = "brain-dead simple config-ini parsing"
-category = "dev"
+category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -1680,14 +1978,14 @@ files = [
 
 [[package]]
 name = "ipykernel"
-version = "6.29.4"
+version = "6.29.5"
 description = "IPython Kernel for Jupyter"
 category = "main"
 optional = false
 python-versions = ">=3.8"
 files = [
-    {file = "ipykernel-6.29.4-py3-none-any.whl", hash = "sha256:1181e653d95c6808039c509ef8e67c4126b3b3af7781496c7cbfb5ed938a27da"},
-    {file = "ipykernel-6.29.4.tar.gz", hash = "sha256:3d44070060f9475ac2092b760123fadf105d2e2493c24848b6691a7c4f42af5c"},
+    {file = "ipykernel-6.29.5-py3-none-any.whl", hash = "sha256:afdb66ba5aa354b09b91379bac28ae4afebbb30e8b39510c9690afb7a10421b5"},
+    {file = "ipykernel-6.29.5.tar.gz", hash = "sha256:f093a22c4a40f8828f8e330a9c297cb93dcab13bd9678ded6de8e5cf81c56215"},
 ]
 
 [package.dependencies]
@@ -1764,14 +2062,14 @@ files = [
 
 [[package]]
 name = "ipywidgets"
-version = "7.8.1"
+version = "7.8.5"
 description = "IPython HTML widgets for Jupyter"
 category = "main"
 optional = false
 python-versions = "*"
 files = [
-    {file = "ipywidgets-7.8.1-py2.py3-none-any.whl", hash = "sha256:29f7056d368bf0a7b35d51cf0c56b58582da57c78bb9f765965fef7c332e807c"},
-    {file = "ipywidgets-7.8.1.tar.gz", hash = "sha256:050b87bb9ac11641859af4c36cdb639ca072fb5e121f0f1a401f8a80f9fa008d"},
+    {file = "ipywidgets-7.8.5-py2.py3-none-any.whl", hash = "sha256:8055fe314edd4c101a5f1ea230620ef5e315b0ca87f940264b4eac1faf9746ef"},
+    {file = "ipywidgets-7.8.5.tar.gz", hash = "sha256:927439399d75f59f43864c13d7e73b05a4de522d3ea09d6048adc5c583b55c3b"},
 ]
 
 [package.dependencies]
@@ -1780,7 +2078,7 @@ ipython = {version = ">=4.0.0", markers = "python_version >= \"3.3\""}
 ipython-genutils = ">=0.2.0,<0.3.0"
 jupyterlab-widgets = {version = ">=1.0.0,<3", markers = "python_version >= \"3.6\""}
 traitlets = ">=4.3.1"
-widgetsnbextension = ">=3.6.6,<3.7.0"
+widgetsnbextension = ">=3.6.10,<3.7.0"
 
 [package.extras]
 test = ["ipykernel", "mock", "pytest (>=3.6.0)", "pytest-cov"]
@@ -1817,23 +2115,23 @@ colors = ["colorama (>=0.4.6)"]
 
 [[package]]
 name = "jedi"
-version = "0.19.1"
+version = "0.19.2"
 description = "An autocompletion tool for Python that can be used for text editors."
 category = "main"
 optional = false
 python-versions = ">=3.6"
 files = [
-    {file = "jedi-0.19.1-py2.py3-none-any.whl", hash = "sha256:e983c654fe5c02867aef4cdfce5a2fbb4a50adc0af145f70504238f18ef5e7e0"},
-    {file = "jedi-0.19.1.tar.gz", hash = "sha256:cf0496f3651bc65d7174ac1b7d043eff454892c708a87d1b683e57b569927ffd"},
+    {file = "jedi-0.19.2-py2.py3-none-any.whl", hash = "sha256:a8ef22bde8490f57fe5c7681a3c83cb58874daf72b4784de3cce5b6ef6edb5b9"},
+    {file = "jedi-0.19.2.tar.gz", hash = "sha256:4770dc3de41bde3966b02eb84fbcf557fb33cce26ad23da12c742fb50ecb11f0"},
 ]
 
 [package.dependencies]
-parso = ">=0.8.3,<0.9.0"
+parso = ">=0.8.4,<0.9.0"
 
 [package.extras]
 docs = ["Jinja2 (==2.11.3)", "MarkupSafe (==1.1.1)", "Pygments (==2.8.1)", "alabaster (==0.7.12)", "babel (==2.9.1)", "chardet (==4.0.0)", "commonmark (==0.8.1)", "docutils (==0.17.1)", "future (==0.18.2)", "idna (==2.10)", "imagesize (==1.2.0)", "mock (==1.0.1)", "packaging (==20.9)", "pyparsing (==2.4.7)", "pytz (==2021.1)", "readthedocs-sphinx-ext (==2.1.4)", "recommonmark (==0.5.0)", "requests (==2.25.1)", "six (==1.15.0)", "snowballstemmer (==2.1.0)", "sphinx (==1.8.5)", "sphinx-rtd-theme (==0.4.3)", "sphinxcontrib-serializinghtml (==1.1.4)", "sphinxcontrib-websupport (==1.2.4)", "urllib3 (==1.26.4)"]
 qa = ["flake8 (==5.0.4)", "mypy (==0.971)", "types-setuptools (==67.2.0.1)"]
-testing = ["Django", "attrs", "colorama", "docopt", "pytest (<7.0.0)"]
+testing = ["Django", "attrs", "colorama", "docopt", "pytest (<9.0.0)"]
 
 [[package]]
 name = "jinja2"
@@ -1865,28 +2163,43 @@ files = [
     {file = "joblib-1.4.2.tar.gz", hash = "sha256:2382c5816b2636fbd20a09e0f4e9dad4736765fdfb7dca582943b9c1366b3f0e"},
 ]
 
+[[package]]
+name = "json5"
+version = "0.10.0"
+description = "A Python implementation of the JSON5 data format."
+category = "main"
+optional = false
+python-versions = ">=3.8.0"
+files = [
+    {file = "json5-0.10.0-py3-none-any.whl", hash = "sha256:19b23410220a7271e8377f81ba8aacba2fdd56947fbb137ee5977cbe1f5e8dfa"},
+    {file = "json5-0.10.0.tar.gz", hash = "sha256:e66941c8f0a02026943c52c2eb34ebeb2a6f819a0be05920a6f5243cd30fd559"},
+]
+
+[package.extras]
+dev = ["build (==1.2.2.post1)", "coverage (==7.5.3)", "mypy (==1.13.0)", "pip (==24.3.1)", "pylint (==3.2.3)", "ruff (==0.7.3)", "twine (==5.1.1)", "uv (==0.5.1)"]
+
 [[package]]
 name = "jsonpointer"
-version = "2.4"
+version = "3.0.0"
 description = "Identify specific nodes in a JSON document (RFC 6901)"
 category = "main"
 optional = false
-python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*, !=3.6.*"
+python-versions = ">=3.7"
 files = [
-    {file = "jsonpointer-2.4-py2.py3-none-any.whl", hash = "sha256:15d51bba20eea3165644553647711d150376234112651b4f1811022aecad7d7a"},
-    {file = "jsonpointer-2.4.tar.gz", hash = "sha256:585cee82b70211fa9e6043b7bb89db6e1aa49524340dde8ad6b63206ea689d88"},
+    {file = "jsonpointer-3.0.0-py2.py3-none-any.whl", hash = "sha256:13e088adc14fca8b6aa8177c044e12701e6ad4b28ff10e65f2267a90109c9942"},
+    {file = "jsonpointer-3.0.0.tar.gz", hash = "sha256:2b2d729f2091522d61c3b31f82e11870f60b68f43fbc705cb76bf4b832af59ef"},
 ]
 
 [[package]]
 name = "jsonschema"
-version = "4.22.0"
+version = "4.23.0"
 description = "An implementation of JSON Schema validation for Python"
 category = "main"
 optional = false
 python-versions = ">=3.8"
 files = [
-    {file = "jsonschema-4.22.0-py3-none-any.whl", hash = "sha256:ff4cfd6b1367a40e7bc6411caec72effadd3db0bbe5017de188f2d6108335802"},
-    {file = "jsonschema-4.22.0.tar.gz", hash = "sha256:5b22d434a45935119af990552c862e5d6d564e8f6601206b305a61fdf661a2b7"},
+    {file = "jsonschema-4.23.0-py3-none-any.whl", hash = "sha256:fbadb6f8b144a8f8cf9f0b89ba94501d143e50411a1278633f56a7acf7fd5566"},
+    {file = "jsonschema-4.23.0.tar.gz", hash = "sha256:d71497fef26351a33265337fa77ffeb82423f3ea21283cd9467bb03999266bc4"},
 ]
 
 [package.dependencies]
@@ -1901,22 +2214,22 @@ rfc3339-validator = {version = "*", optional = true, markers = "extra == \"forma
 rfc3986-validator = {version = ">0.1.0", optional = true, markers = "extra == \"format-nongpl\""}
 rpds-py = ">=0.7.1"
 uri-template = {version = "*", optional = true, markers = "extra == \"format-nongpl\""}
-webcolors = {version = ">=1.11", optional = true, markers = "extra == \"format-nongpl\""}
+webcolors = {version = ">=24.6.0", optional = true, markers = "extra == \"format-nongpl\""}
 
 [package.extras]
 format = ["fqdn", "idna", "isoduration", "jsonpointer (>1.13)", "rfc3339-validator", "rfc3987", "uri-template", "webcolors (>=1.11)"]
-format-nongpl = ["fqdn", "idna", "isoduration", "jsonpointer (>1.13)", "rfc3339-validator", "rfc3986-validator (>0.1.0)", "uri-template", "webcolors (>=1.11)"]
+format-nongpl = ["fqdn", "idna", "isoduration", "jsonpointer (>1.13)", "rfc3339-validator", "rfc3986-validator (>0.1.0)", "uri-template", "webcolors (>=24.6.0)"]
 
 [[package]]
 name = "jsonschema-specifications"
-version = "2023.12.1"
+version = "2024.10.1"
 description = "The JSON Schema meta-schemas and vocabularies, exposed as a Registry"
 category = "main"
 optional = false
-python-versions = ">=3.8"
+python-versions = ">=3.9"
 files = [
-    {file = "jsonschema_specifications-2023.12.1-py3-none-any.whl", hash = "sha256:87e4fdf3a94858b8a2ba2778d9ba57d8a9cafca7c7489c46ba0d30a8bc6a9c3c"},
-    {file = "jsonschema_specifications-2023.12.1.tar.gz", hash = "sha256:48a76787b3e70f5ed53f1160d2b81f586e4ca6d1548c5de7085d1682674764cc"},
+    {file = "jsonschema_specifications-2024.10.1-py3-none-any.whl", hash = "sha256:a09a0680616357d9a0ecf05c12ad234479f549239d0f5b55f3deea67475da9bf"},
+    {file = "jsonschema_specifications-2024.10.1.tar.gz", hash = "sha256:0f38b83639958ce1152d02a7f062902c41c8fd20d558b0c34344292d417ae272"},
 ]
 
 [package.dependencies]
@@ -1924,24 +2237,23 @@ referencing = ">=0.31.0"
 
 [[package]]
 name = "jupyter"
-version = "1.0.0"
+version = "1.1.1"
 description = "Jupyter metapackage. Install all the Jupyter components in one go."
 category = "main"
 optional = false
 python-versions = "*"
 files = [
-    {file = "jupyter-1.0.0-py2.py3-none-any.whl", hash = "sha256:5b290f93b98ffbc21c0c7e749f054b3267782166d72fa5e3ed1ed4eaf34a2b78"},
-    {file = "jupyter-1.0.0.tar.gz", hash = "sha256:d9dc4b3318f310e34c82951ea5d6683f67bed7def4b259fafbfe4f1beb1d8e5f"},
-    {file = "jupyter-1.0.0.zip", hash = "sha256:3e1f86076bbb7c8c207829390305a2b1fe836d471ed54be66a3b8c41e7f46cc7"},
+    {file = "jupyter-1.1.1-py2.py3-none-any.whl", hash = "sha256:7a59533c22af65439b24bbe60373a4e95af8f16ac65a6c00820ad378e3f7cc83"},
+    {file = "jupyter-1.1.1.tar.gz", hash = "sha256:d55467bceabdea49d7e3624af7e33d59c37fff53ed3a350e1ac957bed731de7a"},
 ]
 
 [package.dependencies]
 ipykernel = "*"
 ipywidgets = "*"
 jupyter-console = "*"
+jupyterlab = "*"
 nbconvert = "*"
 notebook = "*"
-qtconsole = "*"
 
 [[package]]
 name = "jupyter-client"
@@ -2040,16 +2352,32 @@ cli = ["click", "rich"]
 docs = ["jupyterlite-sphinx", "myst-parser", "pydata-sphinx-theme", "sphinxcontrib-spelling"]
 test = ["click", "pre-commit", "pytest (>=7.0)", "pytest-asyncio (>=0.19.0)", "pytest-console-scripts", "rich"]
 
+[[package]]
+name = "jupyter-lsp"
+version = "2.2.5"
+description = "Multi-Language Server WebSocket proxy for Jupyter Notebook/Lab server"
+category = "main"
+optional = false
+python-versions = ">=3.8"
+files = [
+    {file = "jupyter-lsp-2.2.5.tar.gz", hash = "sha256:793147a05ad446f809fd53ef1cd19a9f5256fd0a2d6b7ce943a982cb4f545001"},
+    {file = "jupyter_lsp-2.2.5-py3-none-any.whl", hash = "sha256:45fbddbd505f3fbfb0b6cb2f1bc5e15e83ab7c79cd6e89416b248cb3c00c11da"},
+]
+
+[package.dependencies]
+importlib-metadata = {version = ">=4.8.3", markers = "python_version < \"3.10\""}
+jupyter-server = ">=1.1.2"
+
 [[package]]
 name = "jupyter-server"
-version = "2.14.0"
+version = "2.14.2"
 description = "The backend—i.e. core services, APIs, and REST endpoints—to Jupyter web applications."
 category = "main"
 optional = false
 python-versions = ">=3.8"
 files = [
-    {file = "jupyter_server-2.14.0-py3-none-any.whl", hash = "sha256:fb6be52c713e80e004fac34b35a0990d6d36ba06fd0a2b2ed82b899143a64210"},
-    {file = "jupyter_server-2.14.0.tar.gz", hash = "sha256:659154cea512083434fd7c93b7fe0897af7a2fd0b9dd4749282b42eaac4ae677"},
+    {file = "jupyter_server-2.14.2-py3-none-any.whl", hash = "sha256:47ff506127c2f7851a17bf4713434208fc490955d0e8632e95014a9a9afbeefd"},
+    {file = "jupyter_server-2.14.2.tar.gz", hash = "sha256:66095021aa9638ced276c248b1d81862e4c50f292d575920bbe960de1c56b12b"},
 ]
 
 [package.dependencies]
@@ -2074,7 +2402,7 @@ traitlets = ">=5.6.0"
 websocket-client = ">=1.7"
 
 [package.extras]
-docs = ["ipykernel", "jinja2", "jupyter-client", "jupyter-server", "myst-parser", "nbformat", "prometheus-client", "pydata-sphinx-theme", "send2trash", "sphinx-autodoc-typehints", "sphinxcontrib-github-alt", "sphinxcontrib-openapi (>=0.8.0)", "sphinxcontrib-spelling", "sphinxemoji", "tornado", "typing-extensions"]
+docs = ["ipykernel", "jinja2", "jupyter-client", "myst-parser", "nbformat", "prometheus-client", "pydata-sphinx-theme", "send2trash", "sphinx-autodoc-typehints", "sphinxcontrib-github-alt", "sphinxcontrib-openapi (>=0.8.0)", "sphinxcontrib-spelling", "sphinxemoji", "tornado", "typing-extensions"]
 test = ["flaky", "ipykernel", "pre-commit", "pytest (>=7.0,<9)", "pytest-console-scripts", "pytest-jupyter[server] (>=0.7)", "pytest-timeout", "requests"]
 
 [[package]]
@@ -2097,6 +2425,42 @@ terminado = ">=0.8.3"
 docs = ["jinja2", "jupyter-server", "mistune (<4.0)", "myst-parser", "nbformat", "packaging", "pydata-sphinx-theme", "sphinxcontrib-github-alt", "sphinxcontrib-openapi", "sphinxcontrib-spelling", "sphinxemoji", "tornado"]
 test = ["jupyter-server (>=2.0.0)", "pytest (>=7.0)", "pytest-jupyter[server] (>=0.5.3)", "pytest-timeout"]
 
+[[package]]
+name = "jupyterlab"
+version = "4.3.2"
+description = "JupyterLab computational environment"
+category = "main"
+optional = false
+python-versions = ">=3.8"
+files = [
+    {file = "jupyterlab-4.3.2-py3-none-any.whl", hash = "sha256:e87100cbab8b886ff7a4f325c856100ba6fdfe916162a85409daf0e707e19d1d"},
+    {file = "jupyterlab-4.3.2.tar.gz", hash = "sha256:3c0a6882dbddcc0a7bfdd5e2236f351b2b263e48780236e6996c2aca13ac5b22"},
+]
+
+[package.dependencies]
+async-lru = ">=1.0.0"
+httpx = ">=0.28.0,<0.29.0"
+importlib-metadata = {version = ">=4.8.3", markers = "python_version < \"3.10\""}
+ipykernel = ">=6.5.0"
+jinja2 = ">=3.0.3"
+jupyter-core = "*"
+jupyter-lsp = ">=2.0.0"
+jupyter-server = ">=2.4.0,<3"
+jupyterlab-server = ">=2.27.1,<3"
+notebook-shim = ">=0.2"
+packaging = "*"
+setuptools = ">=40.8.0"
+tomli = {version = ">=1.2.2", markers = "python_version < \"3.11\""}
+tornado = ">=6.2.0"
+traitlets = "*"
+
+[package.extras]
+dev = ["build", "bump2version", "coverage", "hatch", "pre-commit", "pytest-cov", "ruff (==0.6.9)"]
+docs = ["jsx-lexer", "myst-parser", "pydata-sphinx-theme (>=0.13.0)", "pytest", "pytest-check-links", "pytest-jupyter", "sphinx (>=1.8,<8.1.0)", "sphinx-copybutton"]
+docs-screenshots = ["altair (==5.4.1)", "ipython (==8.16.1)", "ipywidgets (==8.1.5)", "jupyterlab-geojson (==3.4.0)", "jupyterlab-language-pack-zh-cn (==4.2.post3)", "matplotlib (==3.9.2)", "nbconvert (>=7.0.0)", "pandas (==2.2.3)", "scipy (==1.14.1)", "vega-datasets (==0.9.0)"]
+test = ["coverage", "pytest (>=7.0)", "pytest-check-links (>=0.7)", "pytest-console-scripts", "pytest-cov", "pytest-jupyter (>=0.5.3)", "pytest-timeout", "pytest-tornasync", "requests", "requests-cache", "virtualenv"]
+upgrade-extension = ["copier (>=9,<10)", "jinja2-time (<0.3)", "pydantic (<3.0)", "pyyaml-include (<3.0)", "tomli-w (<2.0)"]
+
 [[package]]
 name = "jupyterlab-pygments"
 version = "0.3.0"
@@ -2109,28 +2473,55 @@ files = [
     {file = "jupyterlab_pygments-0.3.0.tar.gz", hash = "sha256:721aca4d9029252b11cfa9d185e5b5af4d54772bb8072f9b7036f4170054d35d"},
 ]
 
+[[package]]
+name = "jupyterlab-server"
+version = "2.27.3"
+description = "A set of server components for JupyterLab and JupyterLab like applications."
+category = "main"
+optional = false
+python-versions = ">=3.8"
+files = [
+    {file = "jupyterlab_server-2.27.3-py3-none-any.whl", hash = "sha256:e697488f66c3db49df675158a77b3b017520d772c6e1548c7d9bcc5df7944ee4"},
+    {file = "jupyterlab_server-2.27.3.tar.gz", hash = "sha256:eb36caca59e74471988f0ae25c77945610b887f777255aa21f8065def9e51ed4"},
+]
+
+[package.dependencies]
+babel = ">=2.10"
+importlib-metadata = {version = ">=4.8.3", markers = "python_version < \"3.10\""}
+jinja2 = ">=3.0.3"
+json5 = ">=0.9.0"
+jsonschema = ">=4.18.0"
+jupyter-server = ">=1.21,<3"
+packaging = ">=21.3"
+requests = ">=2.31"
+
+[package.extras]
+docs = ["autodoc-traits", "jinja2 (<3.2.0)", "mistune (<4)", "myst-parser", "pydata-sphinx-theme", "sphinx", "sphinx-copybutton", "sphinxcontrib-openapi (>0.8)"]
+openapi = ["openapi-core (>=0.18.0,<0.19.0)", "ruamel-yaml"]
+test = ["hatch", "ipykernel", "openapi-core (>=0.18.0,<0.19.0)", "openapi-spec-validator (>=0.6.0,<0.8.0)", "pytest (>=7.0,<8)", "pytest-console-scripts", "pytest-cov", "pytest-jupyter[server] (>=0.6.2)", "pytest-timeout", "requests-mock", "ruamel-yaml", "sphinxcontrib-spelling", "strict-rfc3339", "werkzeug"]
+
 [[package]]
 name = "jupyterlab-widgets"
-version = "1.1.7"
+version = "1.1.11"
 description = "A JupyterLab extension."
 category = "main"
 optional = false
 python-versions = ">=3.6"
 files = [
-    {file = "jupyterlab_widgets-1.1.7-py3-none-any.whl", hash = "sha256:0c4548cf42032e490447e4180f2c7d49ba5c30b42164992b38fb8c9d56c4e1b2"},
-    {file = "jupyterlab_widgets-1.1.7.tar.gz", hash = "sha256:318dab34267915d658e7b0dc57433ff0ce0d52b3e283986b73b66f7ab9017ae8"},
+    {file = "jupyterlab_widgets-1.1.11-py3-none-any.whl", hash = "sha256:840e538021d87e020a8e7b786597f088431f4ebd8308655555e126c3950a1b27"},
+    {file = "jupyterlab_widgets-1.1.11.tar.gz", hash = "sha256:414cdbcd99db6e8f1174c7e4ed49c6ba368779f4659806fb1d824f3c377218e4"},
 ]
 
 [[package]]
 name = "jupytext"
-version = "1.16.2"
+version = "1.16.4"
 description = "Jupyter notebooks as Markdown documents, Julia, Python or R scripts"
 category = "main"
 optional = false
 python-versions = ">=3.8"
 files = [
-    {file = "jupytext-1.16.2-py3-none-any.whl", hash = "sha256:197a43fef31dca612b68b311e01b8abd54441c7e637810b16b6cb8f2ab66065e"},
-    {file = "jupytext-1.16.2.tar.gz", hash = "sha256:8627dd9becbbebd79cc4a4ed4727d89d78e606b4b464eab72357b3b029023a14"},
+    {file = "jupytext-1.16.4-py3-none-any.whl", hash = "sha256:76989d2690e65667ea6fb411d8056abe7cd0437c07bd774660b83d62acf9490a"},
+    {file = "jupytext-1.16.4.tar.gz", hash = "sha256:28e33f46f2ce7a41fb9d677a4a2c95327285579b64ca104437c4b9eb1e4174e9"},
 ]
 
 [package.dependencies]
@@ -2142,25 +2533,25 @@ pyyaml = "*"
 tomli = {version = "*", markers = "python_version < \"3.11\""}
 
 [package.extras]
-dev = ["autopep8", "black", "flake8", "gitpython", "ipykernel", "isort", "jupyter-fs (<0.4.0)", "jupyter-server (!=2.11)", "nbconvert", "pre-commit", "pytest", "pytest-cov (>=2.6.1)", "pytest-randomly", "pytest-xdist", "sphinx-gallery (<0.8)"]
+dev = ["autopep8", "black", "flake8", "gitpython", "ipykernel", "isort", "jupyter-fs (>=1.0)", "jupyter-server (!=2.11)", "nbconvert", "pre-commit", "pytest", "pytest-cov (>=2.6.1)", "pytest-randomly", "pytest-xdist", "sphinx-gallery (<0.8)"]
 docs = ["myst-parser", "sphinx", "sphinx-copybutton", "sphinx-rtd-theme"]
 test = ["pytest", "pytest-randomly", "pytest-xdist"]
 test-cov = ["ipykernel", "jupyter-server (!=2.11)", "nbconvert", "pytest", "pytest-cov (>=2.6.1)", "pytest-randomly", "pytest-xdist"]
-test-external = ["autopep8", "black", "flake8", "gitpython", "ipykernel", "isort", "jupyter-fs (<0.4.0)", "jupyter-server (!=2.11)", "nbconvert", "pre-commit", "pytest", "pytest-randomly", "pytest-xdist", "sphinx-gallery (<0.8)"]
+test-external = ["autopep8", "black", "flake8", "gitpython", "ipykernel", "isort", "jupyter-fs (>=1.0)", "jupyter-server (!=2.11)", "nbconvert", "pre-commit", "pytest", "pytest-randomly", "pytest-xdist", "sphinx-gallery (<0.8)"]
 test-functional = ["pytest", "pytest-randomly", "pytest-xdist"]
 test-integration = ["ipykernel", "jupyter-server (!=2.11)", "nbconvert", "pytest", "pytest-randomly", "pytest-xdist"]
 test-ui = ["calysto-bash"]
 
 [[package]]
 name = "keras"
-version = "3.3.3"
-description = "Multi-backend Keras."
+version = "3.7.0"
+description = "Multi-backend Keras"
 category = "main"
 optional = true
 python-versions = ">=3.9"
 files = [
-    {file = "keras-3.3.3-py3-none-any.whl", hash = "sha256:260df9ef71c6b89eb6816ce1c60f139c38ccdddd16f24e7005d2be127cdef8e4"},
-    {file = "keras-3.3.3.tar.gz", hash = "sha256:f2fdffc8434fd77045cf8fb21816dbaa2308d5f76974ca924b2f60b40433b1a0"},
+    {file = "keras-3.7.0-py3-none-any.whl", hash = "sha256:546a64f302e4779c129c06d9826fa586de752cdfd43d7dc4010c31b282587969"},
+    {file = "keras-3.7.0.tar.gz", hash = "sha256:a4451a5591e75dfb414d0b84a3fd2fb9c0240cc87ebe7e397f547ce10b0e67b7"},
 ]
 
 [package.dependencies]
@@ -2170,120 +2561,131 @@ ml-dtypes = "*"
 namex = "*"
 numpy = "*"
 optree = "*"
+packaging = "*"
 rich = "*"
 
 [[package]]
 name = "kiwisolver"
-version = "1.4.5"
+version = "1.4.7"
 description = "A fast implementation of the Cassowary constraint solver"
 category = "main"
 optional = false
-python-versions = ">=3.7"
+python-versions = ">=3.8"
 files = [
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 [[package]]
@@ -2341,6 +2743,7 @@ category = "main"
 optional = true
 python-versions = "*"
 files = [
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@@ -2367,16 +2770,47 @@ files = [
 [package.dependencies]
 fire = "*"
 
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+description = "lightweight wrapper around basic LLVM functionality"
+category = "main"
+optional = false
+python-versions = ">=3.9"
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+version = "1.3.7"
 description = "A super-fast templating language that borrows the best ideas from the existing templating languages."
 category = "main"
 optional = true
 python-versions = ">=3.8"
 files = [
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 [package.dependencies]
@@ -2389,14 +2823,14 @@ testing = ["pytest"]
 
 [[package]]
 name = "markdown"
-version = "3.6"
+version = "3.7"
 description = "Python implementation of John Gruber's Markdown."
 category = "main"
 optional = true
 python-versions = ">=3.8"
 files = [
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 [package.dependencies]
@@ -2408,14 +2842,14 @@ testing = ["coverage", "pyyaml"]
 
 [[package]]
 name = "markdown-it-py"
-version = "3.0.0"
+version = "2.2.0"
 description = "Python port of markdown-it. Markdown parsing, done right!"
 category = "main"
 optional = false
-python-versions = ">=3.8"
+python-versions = ">=3.7"
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 [package.dependencies]
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 linkify = ["linkify-it-py (>=1,<3)"]
 plugins = ["mdit-py-plugins"]
 profiling = ["gprof2dot"]
-rtd = ["jupyter_sphinx", "mdit-py-plugins", "myst-parser", "pyyaml", "sphinx", "sphinx-copybutton", "sphinx-design", "sphinx_book_theme"]
+rtd = ["attrs", "myst-parser", "pyyaml", "sphinx", "sphinx-copybutton", "sphinx-design", "sphinx_book_theme"]
 testing = ["coverage", "pytest", "pytest-cov", "pytest-regressions"]
 
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-version = "2.1.5"
+version = "3.0.2"
 description = "Safely add untrusted strings to HTML/XML markup."
 category = "main"
 optional = false
-python-versions = ">=3.7"
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 python-dateutil = ">=2.7"
 
 [package.extras]
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 [[package]]
 name = "matplotlib-inline"
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 version = "0.7.0"
 description = "McCabe checker, plugin for flake8"
-category = "dev"
+category = "main"
 optional = false
 python-versions = ">=3.6"
 files = [
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 testing = ["coverage", "pytest", "pytest-cov", "pytest-regressions"]
 
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 [package.dependencies]
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 ]
 
 [package.dependencies]
 mypy-extensions = ">=1.0.0"
 tomli = {version = ">=1.1.0", markers = "python_version < \"3.11\""}
-typing-extensions = ">=4.1.0"
+typing-extensions = ">=4.6.0"
 
 [package.extras]
 dmypy = ["psutil (>=4.0)"]
+faster-cache = ["orjson"]
 install-types = ["pip"]
 mypyc = ["setuptools (>=50)"]
 reports = ["lxml"]
@@ -2972,7 +3438,7 @@ reports = ["lxml"]
 name = "mypy-extensions"
 version = "1.0.0"
 description = "Type system extensions for programs checked with the mypy type checker."
-category = "dev"
+category = "main"
 optional = false
 python-versions = ">=3.5"
 files = [
@@ -2980,6 +3446,33 @@ files = [
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 ]
 
+[[package]]
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+version = "0.18.1"
+description = "An extended commonmark compliant parser, with bridges to docutils & sphinx."
+category = "main"
+optional = false
+python-versions = ">=3.7"
+files = [
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+mdit-py-plugins = ">=0.3.1,<0.4.0"
+pyyaml = "*"
+sphinx = ">=4,<6"
+typing-extensions = "*"
+
+[package.extras]
+code-style = ["pre-commit (>=2.12,<3.0)"]
+linkify = ["linkify-it-py (>=1.0,<2.0)"]
+rtd = ["ipython", "sphinx-book-theme", "sphinx-design", "sphinxcontrib.mermaid (>=0.7.1,<0.8.0)", "sphinxext-opengraph (>=0.6.3,<0.7.0)", "sphinxext-rediraffe (>=0.2.7,<0.3.0)"]
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+
 [[package]]
 name = "namex"
 version = "0.0.8"
@@ -2994,34 +3487,21 @@ files = [
 
 [[package]]
 name = "nbclassic"
-version = "1.0.0"
+version = "1.1.0"
 description = "Jupyter Notebook as a Jupyter Server extension."
 category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
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 ipython-genutils = "*"
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 nest-asyncio = ">=1.5"
 notebook-shim = ">=0.2.3"
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-terminado = ">=0.8.3"
-tornado = ">=6.1"
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 [package.extras]
 docs = ["myst-parser", "nbsphinx", "sphinx", "sphinx-rtd-theme", "sphinxcontrib-github-alt"]
@@ -3030,14 +3510,14 @@ test = ["coverage", "nbval", "pytest", "pytest-cov", "pytest-jupyter", "pytest-p
 
 [[package]]
 name = "nbclient"
-version = "0.10.0"
+version = "0.10.1"
 description = "A client library for executing notebooks. Formerly nbconvert's ExecutePreprocessor."
 category = "main"
 optional = false
 python-versions = ">=3.8.0"
 files = [
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 ]
 
 [package.dependencies]
@@ -3048,7 +3528,7 @@ traitlets = ">=5.4"
 
 [package.extras]
 dev = ["pre-commit"]
-docs = ["autodoc-traits", "mock", "moto", "myst-parser", "nbclient[test]", "sphinx (>=1.7)", "sphinx-book-theme", "sphinxcontrib-spelling"]
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 [[package]]
@@ -3112,16 +3592,85 @@ traitlets = ">=5.1"
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 test = ["pep440", "pre-commit", "pytest", "testpath"]
 
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+version = "0.9.3"
+description = "Jupyter Notebook Tools for Sphinx"
+category = "main"
+optional = false
+python-versions = ">=3.6"
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+traitlets = ">=5"
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+version = "1.9.2"
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 [package.extras]
@@ -3211,6 +3760,41 @@ jupyter-server = ">=1.8,<3"
 [package.extras]
 test = ["pytest", "pytest-console-scripts", "pytest-jupyter", "pytest-tornasync"]
 
+[[package]]
+name = "numba"
+version = "0.60.0"
+description = "compiling Python code using LLVM"
+category = "main"
+optional = false
+python-versions = ">=3.9"
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+
+[package.dependencies]
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+numpy = ">=1.22,<2.1"
+
 [[package]]
 name = "numexpr"
 version = "2.10.0"
@@ -3299,6 +3883,25 @@ files = [
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 ]
 
+[[package]]
+name = "numpydoc"
+version = "1.5.0"
+description = "Sphinx extension to support docstrings in Numpy format"
+category = "main"
+optional = false
+python-versions = ">=3.7"
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+]
+
+[package.dependencies]
+Jinja2 = ">=2.10"
+sphinx = ">=4.2"
+
+[package.extras]
+testing = ["matplotlib", "pytest", "pytest-cov"]
+
 [[package]]
 name = "nvidia-cublas-cu11"
 version = "11.10.3.66"
@@ -3366,37 +3969,36 @@ wheel = "*"
 
 [[package]]
 name = "onnxruntime"
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+version = "1.16.3"
 description = "ONNX Runtime is a runtime accelerator for Machine Learning models"
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 optional = false
 python-versions = "*"
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 ]
 
 [package.dependencies]
@@ -3409,80 +4011,122 @@ sympy = "*"
 
 [[package]]
 name = "opt-einsum"
-version = "3.3.0"
-description = "Optimizing numpys einsum function"
+version = "3.4.0"
+description = "Path optimization of einsum functions."
 category = "main"
 optional = true
-python-versions = ">=3.5"
+python-versions = ">=3.8"
 files = [
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 ]
 
-[package.dependencies]
-numpy = ">=1.7"
-
-[package.extras]
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-tests = ["pytest", "pytest-cov", "pytest-pep8"]
-
 [[package]]
 name = "optree"
-version = "0.11.0"
+version = "0.13.1"
 description = "Optimized PyTree Utilities."
 category = "main"
 optional = true
 python-versions = ">=3.7"
 files = [
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 [package.dependencies]
-typing-extensions = ">=4.0.0"
+typing-extensions = ">=4.5.0"
 
 [package.extras]
-benchmark = ["dm-tree (>=0.1,<0.2.0a0)", "jax[cpu] (>=0.4.6,<0.5.0a0)", "pandas", "tabulate", "termcolor", "torch (>=2.0,<2.1.0a0)", "torchvision"]
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+benchmark = ["dm-tree (>=0.1,<0.2.0a0)", "jax[cpu] (>=0.4.6,<0.5.0a0)", "pandas", "tabulate", "termcolor", "torch (>=2.0,<2.4.0a0)", "torchvision"]
+docs = ["docutils", "jax[cpu]", "numpy", "sphinx", "sphinx-autoapi", "sphinx-autobuild", "sphinx-autodoc-typehints", "sphinx-copybutton", "sphinx-rtd-theme", "sphinxcontrib-bibtex", "torch"]
 jax = ["jax"]
-lint = ["black (>=22.6.0)", "cpplint", "doc8 (<1.0.0a0)", "flake8", "flake8-bugbear", "flake8-comprehensions", "flake8-docstrings", "flake8-pyi", "flake8-simplify", "isort (>=5.11.0)", "mypy (>=0.990)", "pre-commit", "pydocstyle", "pyenchant", "pylint[spelling] (>=2.15.0)", "ruff", "xdoctest"]
+lint = ["black", "cpplint", "doc8", "flake8", "flake8-bugbear", "flake8-comprehensions", "flake8-docstrings", "flake8-pyi", "flake8-simplify", "isort", "mypy", "pre-commit", "pydocstyle", "pyenchant", "pylint[spelling]", "ruff", "xdoctest"]
 numpy = ["numpy"]
 test = ["pytest", "pytest-cov", "pytest-xdist"]
 torch = ["torch"]
@@ -3537,14 +4181,14 @@ files = [
 
 [[package]]
 name = "packaging"
-version = "24.0"
+version = "24.2"
 description = "Core utilities for Python packages"
 category = "main"
 optional = false
-python-versions = ">=3.7"
+python-versions = ">=3.8"
 files = [
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+    {file = "packaging-24.2.tar.gz", hash = "sha256:c228a6dc5e932d346bc5739379109d49e8853dd8223571c7c5b55260edc0b97f"},
 ]
 
 [[package]]
@@ -3609,19 +4253,33 @@ files = [
 
 [[package]]
 name = "paretoset"
-version = "1.2.3"
+version = "1.2.4"
 description = "Compute the Pareto (non-dominated) set, i.e., skyline operator/query."
 category = "main"
 optional = false
-python-versions = "*"
+python-versions = ">=3.8"
 files = [
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+    {file = "paretoset-1.2.4.tar.gz", hash = "sha256:90c49976f15397a47c06217bcd849d6b8ea37fe8a5fd44ea37f2d8f3672ad05c"},
 ]
 
 [package.dependencies]
+black = "*"
+flake8 = "*"
+ipython = "*"
+matplotlib = "*"
+mypy = "*"
+myst-parser = "*"
+nbsphinx = "*"
+numba = "*"
 numpy = "*"
+numpydoc = "*"
 pandas = "*"
+pep8 = "*"
+pytest = "*"
+recommonmark = "*"
+setuptools = "*"
+sphinx = "*"
 
 [[package]]
 name = "parso"
@@ -3643,7 +4301,7 @@ testing = ["docopt", "pytest"]
 name = "pathspec"
 version = "0.12.1"
 description = "Utility library for gitignore style pattern matching of file paths."
-category = "dev"
+category = "main"
 optional = false
 python-versions = ">=3.8"
 files = [
@@ -3653,14 +4311,26 @@ files = [
 
 [[package]]
 name = "pbr"
-version = "6.0.0"
+version = "6.1.0"
 description = "Python Build Reasonableness"
 category = "main"
 optional = true
 python-versions = ">=2.6"
 files = [
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+    {file = "pbr-6.1.0.tar.gz", hash = "sha256:788183e382e3d1d7707db08978239965e8b9e4e5ed42669bf4758186734d5f24"},
+]
+
+[[package]]
+name = "pep8"
+version = "1.7.1"
+description = "Python style guide checker"
+category = "main"
+optional = false
+python-versions = "*"
+files = [
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+    {file = "pep8-1.7.1.tar.gz", hash = "sha256:fe249b52e20498e59e0b5c5256aa52ee99fc295b26ec9eaa85776ffdb9fe6374"},
 ]
 
 [[package]]
@@ -3760,26 +4430,26 @@ tests = ["check-manifest", "coverage", "defusedxml", "markdown2", "olefile", "pa
 
 [[package]]
 name = "platformdirs"
-version = "4.2.2"
+version = "4.3.6"
 description = "A small Python package for determining appropriate platform-specific dirs, e.g. a `user data dir`."
 category = "main"
 optional = false
 python-versions = ">=3.8"
 files = [
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 ]
 
 [package.extras]
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-test = ["appdirs (==1.4.4)", "covdefaults (>=2.3)", "pytest (>=7.4.3)", "pytest-cov (>=4.1)", "pytest-mock (>=3.12)"]
-type = ["mypy (>=1.8)"]
+docs = ["furo (>=2024.8.6)", "proselint (>=0.14)", "sphinx (>=8.0.2)", "sphinx-autodoc-typehints (>=2.4)"]
+test = ["appdirs (==1.4.4)", "covdefaults (>=2.3)", "pytest (>=8.3.2)", "pytest-cov (>=5)", "pytest-mock (>=3.14)"]
+type = ["mypy (>=1.11.2)"]
 
 [[package]]
 name = "pluggy"
 version = "1.5.0"
 description = "plugin and hook calling mechanisms for python"
-category = "dev"
+category = "main"
 optional = false
 python-versions = ">=3.8"
 files = [
@@ -3793,14 +4463,14 @@ testing = ["pytest", "pytest-benchmark"]
 
 [[package]]
 name = "prettytable"
-version = "3.10.0"
+version = "3.12.0"
 description = "A simple Python library for easily displaying tabular data in a visually appealing ASCII table format"
 category = "main"
 optional = true
-python-versions = ">=3.8"
+python-versions = ">=3.9"
 files = [
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-    {file = "prettytable-3.10.0.tar.gz", hash = "sha256:9665594d137fb08a1117518c25551e0ede1687197cf353a4fdc78d27e1073568"},
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+    {file = "prettytable-3.12.0.tar.gz", hash = "sha256:f04b3e1ba35747ac86e96ec33e3bb9748ce08e254dc2a1c6253945901beec804"},
 ]
 
 [package.dependencies]
@@ -3811,14 +4481,14 @@ tests = ["pytest", "pytest-cov", "pytest-lazy-fixtures"]
 
 [[package]]
 name = "prometheus-client"
-version = "0.20.0"
+version = "0.21.1"
 description = "Python client for the Prometheus monitoring system."
 category = "main"
 optional = false
 python-versions = ">=3.8"
 files = [
-    {file = "prometheus_client-0.20.0-py3-none-any.whl", hash = "sha256:cde524a85bce83ca359cc837f28b8c0db5cac7aa653a588fd7e84ba061c329e7"},
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+    {file = "prometheus_client-0.21.1-py3-none-any.whl", hash = "sha256:594b45c410d6f4f8888940fe80b5cc2521b305a1fafe1c58609ef715a001f301"},
+    {file = "prometheus_client-0.21.1.tar.gz", hash = "sha256:252505a722ac04b0456be05c05f75f45d760c2911ffc45f2a06bcaed9f3ae3fb"},
 ]
 
 [package.extras]
@@ -3826,68 +4496,162 @@ twisted = ["twisted"]
 
 [[package]]
 name = "prompt-toolkit"
-version = "3.0.43"
+version = "3.0.48"
 description = "Library for building powerful interactive command lines in Python"
 category = "main"
 optional = false
 python-versions = ">=3.7.0"
 files = [
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+    {file = "prompt_toolkit-3.0.48.tar.gz", hash = "sha256:d6623ab0477a80df74e646bdbc93621143f5caf104206aa29294d53de1a03d90"},
 ]
 
 [package.dependencies]
 wcwidth = "*"
 
+[[package]]
+name = "propcache"
+version = "0.2.1"
+description = "Accelerated property cache"
+category = "main"
+optional = true
+python-versions = ">=3.9"
+files = [
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+
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@@ -4178,14 +5047,14 @@ zstd = ["zstandard"]
 
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@@ -4193,32 +5062,35 @@ diagrams = ["jinja2", "railroad-diagrams"]
 
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@@ -4406,261 +5278,245 @@ torch = "*"
 
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-test = ["flaky", "pytest", "pytest-qt"]
-
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-
 [[package]]
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 version = "1.1.0"
@@ -4711,6 +5567,23 @@ files = [
 numpy = "*"
 Pillow = "*"
 
+[[package]]
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+version = "0.7.1"
+description = "A docutils-compatibility bridge to CommonMark, enabling you to write CommonMark inside of Docutils & Sphinx projects."
+category = "main"
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+sphinx = ">=1.3.1"
+
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@@ -4729,14 +5602,14 @@ rpds-py = ">=0.7.0"
 
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 name = "requests"
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+version = "2.32.3"
 description = "Python HTTP for Humans."
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@@ -4778,40 +5651,43 @@ files = [
 
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+version = "13.9.4"
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+version = "1.2.1"
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+    {file = "scikit_learn-1.5.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:ca64b3089a6d9b9363cd3546f8978229dcbb737aceb2c12144ee3f70f95684b7"},
+    {file = "scikit_learn-1.5.2-cp39-cp39-win_amd64.whl", hash = "sha256:3bed4909ba187aca80580fe2ef370d9180dcf18e621a27c4cf2ef10d279a7efe"},
+    {file = "scikit_learn-1.5.2.tar.gz", hash = "sha256:b4237ed7b3fdd0a4882792e68ef2545d5baa50aca3bb45aa7df468138ad8f94d"},
 ]
 
 [package.dependencies]
@@ -4968,12 +5853,12 @@ threadpoolctl = ">=3.1.0"
 
 [package.extras]
 benchmark = ["matplotlib (>=3.3.4)", "memory_profiler (>=0.57.0)", "pandas (>=1.1.5)"]
-build = ["cython (>=3.0.10)", "meson-python (>=0.15.0)", "numpy (>=1.19.5)", "scipy (>=1.6.0)"]
-docs = ["Pillow (>=7.1.2)", "matplotlib (>=3.3.4)", "memory_profiler (>=0.57.0)", "numpydoc (>=1.2.0)", "pandas (>=1.1.5)", "plotly (>=5.14.0)", "polars (>=0.20.23)", "pooch (>=1.6.0)", "scikit-image (>=0.17.2)", "seaborn (>=0.9.0)", "sphinx (>=6.0.0)", "sphinx-copybutton (>=0.5.2)", "sphinx-gallery (>=0.15.0)", "sphinx-prompt (>=1.3.0)", "sphinxext-opengraph (>=0.4.2)"]
+build = ["cython (>=3.0.10)", "meson-python (>=0.16.0)", "numpy (>=1.19.5)", "scipy (>=1.6.0)"]
+docs = ["Pillow (>=7.1.2)", "matplotlib (>=3.3.4)", "memory_profiler (>=0.57.0)", "numpydoc (>=1.2.0)", "pandas (>=1.1.5)", "plotly (>=5.14.0)", "polars (>=0.20.30)", "pooch (>=1.6.0)", "pydata-sphinx-theme (>=0.15.3)", "scikit-image (>=0.17.2)", "seaborn (>=0.9.0)", "sphinx (>=7.3.7)", "sphinx-copybutton (>=0.5.2)", "sphinx-design (>=0.5.0)", "sphinx-design (>=0.6.0)", "sphinx-gallery (>=0.16.0)", "sphinx-prompt (>=1.4.0)", "sphinx-remove-toctrees (>=1.0.0.post1)", "sphinxcontrib-sass (>=0.3.4)", "sphinxext-opengraph (>=0.9.1)"]
 examples = ["matplotlib (>=3.3.4)", "pandas (>=1.1.5)", "plotly (>=5.14.0)", "pooch (>=1.6.0)", "scikit-image (>=0.17.2)", "seaborn (>=0.9.0)"]
 install = ["joblib (>=1.2.0)", "numpy (>=1.19.5)", "scipy (>=1.6.0)", "threadpoolctl (>=3.1.0)"]
 maintenance = ["conda-lock (==2.5.6)"]
-tests = ["black (>=24.3.0)", "matplotlib (>=3.3.4)", "mypy (>=1.9)", "numpydoc (>=1.2.0)", "pandas (>=1.1.5)", "polars (>=0.20.23)", "pooch (>=1.6.0)", "pyamg (>=4.0.0)", "pyarrow (>=12.0.0)", "pytest (>=7.1.2)", "pytest-cov (>=2.9.0)", "ruff (>=0.2.1)", "scikit-image (>=0.17.2)"]
+tests = ["black (>=24.3.0)", "matplotlib (>=3.3.4)", "mypy (>=1.9)", "numpydoc (>=1.2.0)", "pandas (>=1.1.5)", "polars (>=0.20.30)", "pooch (>=1.6.0)", "pyamg (>=4.0.0)", "pyarrow (>=12.0.0)", "pytest (>=7.1.2)", "pytest-cov (>=2.9.0)", "ruff (>=0.2.1)", "scikit-image (>=0.17.2)"]
 
 [[package]]
 name = "scipy"
@@ -5059,19 +5944,24 @@ win32 = ["pywin32"]
 
 [[package]]
 name = "setuptools"
-version = "70.0.0"
+version = "75.6.0"
 description = "Easily download, build, install, upgrade, and uninstall Python packages"
 category = "main"
-optional = true
-python-versions = ">=3.8"
+optional = false
+python-versions = ">=3.9"
 files = [
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-    {file = "setuptools-70.0.0.tar.gz", hash = "sha256:f211a66637b8fa059bb28183da127d4e86396c991a942b028c6650d4319c3fd0"},
+    {file = "setuptools-75.6.0-py3-none-any.whl", hash = "sha256:ce74b49e8f7110f9bf04883b730f4765b774ef3ef28f722cce7c273d253aaf7d"},
+    {file = "setuptools-75.6.0.tar.gz", hash = "sha256:8199222558df7c86216af4f84c30e9b34a61d8ba19366cc914424cdbd28252f6"},
 ]
 
 [package.extras]
-docs = ["furo", "jaraco.packaging (>=9.3)", "jaraco.tidelift (>=1.4)", "pygments-github-lexers (==0.0.5)", "pyproject-hooks (!=1.1)", "rst.linker (>=1.9)", "sphinx (>=3.5)", "sphinx-favicon", "sphinx-inline-tabs", "sphinx-lint", "sphinx-notfound-page (>=1,<2)", "sphinx-reredirects", "sphinxcontrib-towncrier"]
-testing = ["build[virtualenv] (>=1.0.3)", "filelock (>=3.4.0)", "importlib-metadata", "ini2toml[lite] (>=0.14)", "jaraco.develop (>=7.21)", "jaraco.envs (>=2.2)", "jaraco.path (>=3.2.0)", "mypy (==1.9)", "packaging (>=23.2)", "pip (>=19.1)", "pyproject-hooks (!=1.1)", "pytest (>=6,!=8.1.1)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=2.2)", "pytest-home (>=0.5)", "pytest-mypy", "pytest-perf", "pytest-ruff (>=0.2.1)", "pytest-subprocess", "pytest-timeout", "pytest-xdist (>=3)", "tomli", "tomli-w (>=1.0.0)", "virtualenv (>=13.0.0)", "wheel"]
+check = ["pytest-checkdocs (>=2.4)", "pytest-ruff (>=0.2.1)", "ruff (>=0.7.0)"]
+core = ["importlib_metadata (>=6)", "jaraco.collections", "jaraco.functools (>=4)", "jaraco.text (>=3.7)", "more_itertools", "more_itertools (>=8.8)", "packaging", "packaging (>=24.2)", "platformdirs (>=4.2.2)", "tomli (>=2.0.1)", "wheel (>=0.43.0)"]
+cover = ["pytest-cov"]
+doc = ["furo", "jaraco.packaging (>=9.3)", "jaraco.tidelift (>=1.4)", "pygments-github-lexers (==0.0.5)", "pyproject-hooks (!=1.1)", "rst.linker (>=1.9)", "sphinx (>=3.5)", "sphinx-favicon", "sphinx-inline-tabs", "sphinx-lint", "sphinx-notfound-page (>=1,<2)", "sphinx-reredirects", "sphinxcontrib-towncrier", "towncrier (<24.7)"]
+enabler = ["pytest-enabler (>=2.2)"]
+test = ["build[virtualenv] (>=1.0.3)", "filelock (>=3.4.0)", "ini2toml[lite] (>=0.14)", "jaraco.develop (>=7.21)", "jaraco.envs (>=2.2)", "jaraco.path (>=3.2.0)", "jaraco.test (>=5.5)", "packaging (>=24.2)", "pip (>=19.1)", "pyproject-hooks (!=1.1)", "pytest (>=6,!=8.1.*)", "pytest-home (>=0.5)", "pytest-perf", "pytest-subprocess", "pytest-timeout", "pytest-xdist (>=3)", "tomli-w (>=1.0.0)", "virtualenv (>=13.0.0)", "wheel (>=0.44.0)"]
+type = ["importlib_metadata (>=7.0.2)", "jaraco.develop (>=7.21)", "mypy (>=1.12,<1.14)", "pytest-mypy"]
 
 [[package]]
 name = "six"
@@ -5101,7 +5991,7 @@ files = [
 name = "snowballstemmer"
 version = "2.2.0"
 description = "This package provides 29 stemmers for 28 languages generated from Snowball algorithms."
-category = "dev"
+category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -5111,101 +6001,100 @@ files = [
 
 [[package]]
 name = "soupsieve"
-version = "2.5"
+version = "2.6"
 description = "A modern CSS selector implementation for Beautiful Soup."
 category = "main"
 optional = false
 python-versions = ">=3.8"
 files = [
-    {file = "soupsieve-2.5-py3-none-any.whl", hash = "sha256:eaa337ff55a1579b6549dc679565eac1e3d000563bcb1c8ab0d0fefbc0c2cdc7"},
-    {file = "soupsieve-2.5.tar.gz", hash = "sha256:5663d5a7b3bfaeee0bc4372e7fc48f9cff4940b3eec54a6451cc5299f1097690"},
+    {file = "soupsieve-2.6-py3-none-any.whl", hash = "sha256:e72c4ff06e4fb6e4b5a9f0f55fe6e81514581fca1515028625d0f299c602ccc9"},
+    {file = "soupsieve-2.6.tar.gz", hash = "sha256:e2e68417777af359ec65daac1057404a3c8a5455bb8abc36f1a9866ab1a51abb"},
 ]
 
 [[package]]
 name = "sphinx"
-version = "7.3.7"
+version = "4.5.0"
 description = "Python documentation generator"
-category = "dev"
+category = "main"
 optional = false
-python-versions = ">=3.9"
+python-versions = ">=3.6"
 files = [
-    {file = "sphinx-7.3.7-py3-none-any.whl", hash = "sha256:413f75440be4cacf328f580b4274ada4565fb2187d696a84970c23f77b64d8c3"},
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+    {file = "Sphinx-4.5.0-py3-none-any.whl", hash = "sha256:ebf612653238bcc8f4359627a9b7ce44ede6fdd75d9d30f68255c7383d3a6226"},
+    {file = "Sphinx-4.5.0.tar.gz", hash = "sha256:7bf8ca9637a4ee15af412d1a1d9689fec70523a68ca9bb9127c2f3eeb344e2e6"},
 ]
 
 [package.dependencies]
-alabaster = ">=0.7.14,<0.8.0"
-babel = ">=2.9"
-colorama = {version = ">=0.4.5", markers = "sys_platform == \"win32\""}
-docutils = ">=0.18.1,<0.22"
-imagesize = ">=1.3"
-importlib-metadata = {version = ">=4.8", markers = "python_version < \"3.10\""}
-Jinja2 = ">=3.0"
-packaging = ">=21.0"
-Pygments = ">=2.14"
-requests = ">=2.25.0"
-snowballstemmer = ">=2.0"
+alabaster = ">=0.7,<0.8"
+babel = ">=1.3"
+colorama = {version = ">=0.3.5", markers = "sys_platform == \"win32\""}
+docutils = ">=0.14,<0.18"
+imagesize = "*"
+importlib-metadata = {version = ">=4.4", markers = "python_version < \"3.10\""}
+Jinja2 = ">=2.3"
+packaging = "*"
+Pygments = ">=2.0"
+requests = ">=2.5.0"
+snowballstemmer = ">=1.1"
 sphinxcontrib-applehelp = "*"
 sphinxcontrib-devhelp = "*"
 sphinxcontrib-htmlhelp = ">=2.0.0"
 sphinxcontrib-jsmath = "*"
 sphinxcontrib-qthelp = "*"
-sphinxcontrib-serializinghtml = ">=1.1.9"
-tomli = {version = ">=2", markers = "python_version < \"3.11\""}
+sphinxcontrib-serializinghtml = ">=1.1.5"
 
 [package.extras]
 docs = ["sphinxcontrib-websupport"]
-lint = ["flake8 (>=3.5.0)", "importlib_metadata", "mypy (==1.9.0)", "pytest (>=6.0)", "ruff (==0.3.7)", "sphinx-lint", "tomli", "types-docutils", "types-requests"]
-test = ["cython (>=3.0)", "defusedxml (>=0.7.1)", "pytest (>=6.0)", "setuptools (>=67.0)"]
+lint = ["docutils-stubs", "flake8 (>=3.5.0)", "isort", "mypy (>=0.931)", "types-requests", "types-typed-ast"]
+test = ["cython", "html5lib", "pytest", "pytest-cov", "typed-ast"]
 
 [[package]]
 name = "sphinxcontrib-applehelp"
-version = "1.0.8"
+version = "2.0.0"
 description = "sphinxcontrib-applehelp is a Sphinx extension which outputs Apple help books"
-category = "dev"
+category = "main"
 optional = false
 python-versions = ">=3.9"
 files = [
-    {file = "sphinxcontrib_applehelp-1.0.8-py3-none-any.whl", hash = "sha256:cb61eb0ec1b61f349e5cc36b2028e9e7ca765be05e49641c97241274753067b4"},
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+    {file = "sphinxcontrib_applehelp-2.0.0-py3-none-any.whl", hash = "sha256:4cd3f0ec4ac5dd9c17ec65e9ab272c9b867ea77425228e68ecf08d6b28ddbdb5"},
+    {file = "sphinxcontrib_applehelp-2.0.0.tar.gz", hash = "sha256:2f29ef331735ce958efa4734873f084941970894c6090408b079c61b2e1c06d1"},
 ]
 
 [package.extras]
-lint = ["docutils-stubs", "flake8", "mypy"]
+lint = ["mypy", "ruff (==0.5.5)", "types-docutils"]
 standalone = ["Sphinx (>=5)"]
 test = ["pytest"]
 
 [[package]]
 name = "sphinxcontrib-devhelp"
-version = "1.0.6"
+version = "2.0.0"
 description = "sphinxcontrib-devhelp is a sphinx extension which outputs Devhelp documents"
-category = "dev"
+category = "main"
 optional = false
 python-versions = ">=3.9"
 files = [
-    {file = "sphinxcontrib_devhelp-1.0.6-py3-none-any.whl", hash = "sha256:6485d09629944511c893fa11355bda18b742b83a2b181f9a009f7e500595c90f"},
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+    {file = "sphinxcontrib_devhelp-2.0.0-py3-none-any.whl", hash = "sha256:aefb8b83854e4b0998877524d1029fd3e6879210422ee3780459e28a1f03a8a2"},
+    {file = "sphinxcontrib_devhelp-2.0.0.tar.gz", hash = "sha256:411f5d96d445d1d73bb5d52133377b4248ec79db5c793ce7dbe59e074b4dd1ad"},
 ]
 
 [package.extras]
-lint = ["docutils-stubs", "flake8", "mypy"]
+lint = ["mypy", "ruff (==0.5.5)", "types-docutils"]
 standalone = ["Sphinx (>=5)"]
 test = ["pytest"]
 
 [[package]]
 name = "sphinxcontrib-htmlhelp"
-version = "2.0.5"
+version = "2.1.0"
 description = "sphinxcontrib-htmlhelp is a sphinx extension which renders HTML help files"
-category = "dev"
+category = "main"
 optional = false
 python-versions = ">=3.9"
 files = [
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+    {file = "sphinxcontrib_htmlhelp-2.1.0-py3-none-any.whl", hash = "sha256:166759820b47002d22914d64a075ce08f4c46818e17cfc9470a9786b759b19f8"},
+    {file = "sphinxcontrib_htmlhelp-2.1.0.tar.gz", hash = "sha256:c9e2916ace8aad64cc13a0d233ee22317f2b9025b9cf3295249fa985cc7082e9"},
 ]
 
 [package.extras]
-lint = ["docutils-stubs", "flake8", "mypy"]
+lint = ["mypy", "ruff (==0.5.5)", "types-docutils"]
 standalone = ["Sphinx (>=5)"]
 test = ["html5lib", "pytest"]
 
@@ -5213,7 +6102,7 @@ test = ["html5lib", "pytest"]
 name = "sphinxcontrib-jsmath"
 version = "1.0.1"
 description = "A sphinx extension which renders display math in HTML via JavaScript"
-category = "dev"
+category = "main"
 optional = false
 python-versions = ">=3.5"
 files = [
@@ -5226,99 +6115,107 @@ test = ["flake8", "mypy", "pytest"]
 
 [[package]]
 name = "sphinxcontrib-qthelp"
-version = "1.0.7"
+version = "2.0.0"
 description = "sphinxcontrib-qthelp is a sphinx extension which outputs QtHelp documents"
-category = "dev"
+category = "main"
 optional = false
 python-versions = ">=3.9"
 files = [
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+    {file = "sphinxcontrib_qthelp-2.0.0-py3-none-any.whl", hash = "sha256:b18a828cdba941ccd6ee8445dbe72ffa3ef8cbe7505d8cd1fa0d42d3f2d5f3eb"},
+    {file = "sphinxcontrib_qthelp-2.0.0.tar.gz", hash = "sha256:4fe7d0ac8fc171045be623aba3e2a8f613f8682731f9153bb2e40ece16b9bbab"},
 ]
 
 [package.extras]
-lint = ["docutils-stubs", "flake8", "mypy"]
+lint = ["mypy", "ruff (==0.5.5)", "types-docutils"]
 standalone = ["Sphinx (>=5)"]
-test = ["pytest"]
+test = ["defusedxml (>=0.7.1)", "pytest"]
 
 [[package]]
 name = "sphinxcontrib-serializinghtml"
-version = "1.1.10"
+version = "2.0.0"
 description = "sphinxcontrib-serializinghtml is a sphinx extension which outputs \"serialized\" HTML files (json and pickle)"
-category = "dev"
+category = "main"
 optional = false
 python-versions = ">=3.9"
 files = [
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-    {file = "sphinxcontrib_serializinghtml-1.1.10.tar.gz", hash = "sha256:93f3f5dc458b91b192fe10c397e324f262cf163d79f3282c158e8436a2c4511f"},
+    {file = "sphinxcontrib_serializinghtml-2.0.0-py3-none-any.whl", hash = "sha256:6e2cb0eef194e10c27ec0023bfeb25badbbb5868244cf5bc5bdc04e4464bf331"},
+    {file = "sphinxcontrib_serializinghtml-2.0.0.tar.gz", hash = "sha256:e9d912827f872c029017a53f0ef2180b327c3f7fd23c87229f7a8e8b70031d4d"},
 ]
 
 [package.extras]
-lint = ["docutils-stubs", "flake8", "mypy"]
+lint = ["mypy", "ruff (==0.5.5)", "types-docutils"]
 standalone = ["Sphinx (>=5)"]
 test = ["pytest"]
 
 [[package]]
 name = "sqlalchemy"
-version = "2.0.30"
+version = "2.0.36"
 description = "Database Abstraction Library"
 category = "main"
 optional = true
 python-versions = ">=3.7"
 files = [
-    {file = "SQLAlchemy-2.0.30-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:3b48154678e76445c7ded1896715ce05319f74b1e73cf82d4f8b59b46e9c0ddc"},
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+]
+
+[package.dependencies]
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 typing-extensions = ">=4.6.0"
 
 [package.extras]
@@ -5327,7 +6224,7 @@ aioodbc = ["aioodbc", "greenlet (!=0.4.17)"]
 aiosqlite = ["aiosqlite", "greenlet (!=0.4.17)", "typing_extensions (!=3.10.0.1)"]
 asyncio = ["greenlet (!=0.4.17)"]
 asyncmy = ["asyncmy (>=0.2.3,!=0.2.4,!=0.2.6)", "greenlet (!=0.4.17)"]
-mariadb-connector = ["mariadb (>=1.0.1,!=1.1.2,!=1.1.5)"]
+mariadb-connector = ["mariadb (>=1.0.1,!=1.1.2,!=1.1.5,!=1.1.10)"]
 mssql = ["pyodbc"]
 mssql-pymssql = ["pymssql"]
 mssql-pyodbc = ["pyodbc"]
@@ -5368,33 +6265,36 @@ tests = ["cython", "littleutils", "pygments", "pytest", "typeguard"]
 
 [[package]]
 name = "stevedore"
-version = "5.2.0"
+version = "5.4.0"
 description = "Manage dynamic plugins for Python applications"
 category = "main"
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-python-versions = ">=3.8"
+python-versions = ">=3.9"
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 [package.dependencies]
-pbr = ">=2.0.0,<2.1.0 || >2.1.0"
+pbr = ">=2.0.0"
 
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-version = "1.12"
+version = "1.13.3"
 description = "Computer algebra system (CAS) in Python"
 category = "main"
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 [package.dependencies]
-mpmath = ">=0.19"
+mpmath = ">=1.1.0,<1.4"
+
+[package.extras]
+dev = ["hypothesis (>=6.70.0)", "pytest (>=7.1.0)"]
 
 [[package]]
 name = "tables"
@@ -5435,13 +6335,13 @@ doc = ["ipython", "numpydoc", "sphinx (>=1.1,<6)", "sphinx-rtd-theme"]
 
 [[package]]
 name = "tensorboard"
-version = "2.16.2"
+version = "2.18.0"
 description = "TensorBoard lets you watch Tensors Flow"
 category = "main"
 optional = true
 python-versions = ">=3.9"
 files = [
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 [package.dependencies]
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 grpcio = ">=1.48.2"
 markdown = ">=2.6.8"
 numpy = ">=1.12.0"
+packaging = "*"
 protobuf = ">=3.19.6,<4.24.0 || >4.24.0"
 setuptools = ">=41.0.0"
 six = ">1.9"
@@ -5487,85 +6388,81 @@ protobuf = ">=3.20"
 
 [[package]]
 name = "tensorflow"
-version = "2.16.1"
+version = "2.18.0"
 description = "TensorFlow is an open source machine learning framework for everyone."
 category = "main"
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 python-versions = ">=3.9"
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 [package.dependencies]
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 name = "tensorflow-io-gcs-filesystem"
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 description = "TensorFlow IO"
 category = "main"
 optional = true
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@@ -5577,30 +6474,30 @@ tensorflow-rocm = ["tensorflow-rocm (>=2.16.0,<2.17.0)"]
 
 [[package]]
 name = "tensorflow-serving-api"
-version = "2.16.1"
+version = "2.18.0"
 description = "TensorFlow Serving Python API."
 category = "main"
 optional = true
 python-versions = ">=3.9"
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 [[package]]
 name = "termcolor"
-version = "2.4.0"
+version = "2.5.0"
 description = "ANSI color formatting for output in terminal"
 category = "main"
 optional = true
-python-versions = ">=3.8"
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 [package.extras]
@@ -5653,14 +6550,14 @@ files = [
 
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+version = "1.4.0"
 description = "A tiny CSS parser"
 category = "main"
 optional = false
 python-versions = ">=3.8"
 files = [
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 [package.dependencies]
@@ -5674,7 +6571,7 @@ test = ["pytest", "ruff"]
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 version = "0.10.2"
 description = "Python Library for Tom's Obvious, Minimal Language"
-category = "dev"
+category = "main"
 optional = false
 python-versions = ">=2.6, !=3.0.*, !=3.1.*, !=3.2.*"
 files = [
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-version = "2.0.1"
+version = "2.2.1"
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 name = "tomlkit"
-version = "0.12.5"
+version = "0.13.2"
 description = "Style preserving TOML library"
 category = "dev"
 optional = false
-python-versions = ">=3.7"
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 files = [
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 [[package]]
@@ -5775,42 +6702,43 @@ text = ["nltk (>=3.6)", "regex (>=2021.9.24)", "tqdm (>=4.41.0)"]
 
 [[package]]
 name = "tornado"
-version = "6.4"
+version = "6.4.2"
 description = "Tornado is a Python web framework and asynchronous networking library, originally developed at FriendFeed."
 category = "main"
 optional = false
-python-versions = ">= 3.8"
+python-versions = ">=3.8"
 files = [
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 description = "Fast, Extensible Progress Meter"
 category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
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 [package.dependencies]
 colorama = {version = "*", markers = "platform_system == \"Windows\""}
 
 [package.extras]
-dev = ["pytest (>=6)", "pytest-cov", "pytest-timeout", "pytest-xdist"]
+dev = ["nbval", "pytest (>=6)", "pytest-asyncio (>=0.24)", "pytest-cov", "pytest-timeout"]
+discord = ["requests"]
 notebook = ["ipywidgets (>=6)"]
 slack = ["slack-sdk"]
 telegram = ["requests"]
@@ -5833,26 +6761,26 @@ test = ["argcomplete (>=3.0.3)", "mypy (>=1.7.0)", "pre-commit", "pytest (>=7.0,
 
 [[package]]
 name = "types-python-dateutil"
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 description = "Typing stubs for python-dateutil"
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 python-versions = ">=3.8"
 files = [
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 [[package]]
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+version = "4.12.2"
 description = "Backported and Experimental Type Hints for Python 3.8+"
 category = "main"
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 python-versions = ">=3.8"
 files = [
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 [[package]]
@@ -5872,14 +6800,14 @@ dev = ["flake8", "flake8-annotations", "flake8-bandit", "flake8-bugbear", "flake
 
 [[package]]
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+version = "2.2.3"
 description = "HTTP library with thread-safe connection pooling, file post, and more."
 category = "main"
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 python-versions = ">=3.8"
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 [package.extras]
@@ -5902,20 +6830,16 @@ files = [
 
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+version = "24.11.1"
 description = "A library for working with the color formats defined by HTML and CSS."
 category = "main"
 optional = false
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-tests = ["pytest", "pytest-cov"]
-
 [[package]]
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 version = "0.5.1"
@@ -5947,14 +6871,14 @@ test = ["websockets"]
 
 [[package]]
 name = "werkzeug"
-version = "3.0.3"
+version = "3.1.3"
 description = "The comprehensive WSGI web application library."
 category = "main"
 optional = true
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 [package.dependencies]
@@ -5965,14 +6889,14 @@ watchdog = ["watchdog (>=2.3)"]
 
 [[package]]
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+version = "0.45.1"
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 python-versions = ">=3.8"
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 [package.extras]
@@ -5980,14 +6904,14 @@ test = ["pytest (>=6.0.0)", "setuptools (>=65)"]
 
 [[package]]
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-version = "3.6.6"
+version = "3.6.10"
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 ]
 
 [package.dependencies]
@@ -5995,209 +6919,201 @@ notebook = ">=4.4.1"
 
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+python-versions = ">=3.9"
 files = [
-    {file = "zipp-3.18.2-py3-none-any.whl", hash = "sha256:dce197b859eb796242b0622af1b8beb0a722d52aa2f57133ead08edd5bf5374e"},
-    {file = "zipp-3.18.2.tar.gz", hash = "sha256:6278d9ddbcfb1f1089a88fde84481528b07b0e10474e09dcfe53dad4069fa059"},
+    {file = "zipp-3.21.0-py3-none-any.whl", hash = "sha256:ac1bbe05fd2991f160ebce24ffbac5f6d11d83dc90891255885223d42b3cd931"},
+    {file = "zipp-3.21.0.tar.gz", hash = "sha256:2c9958f6430a2040341a52eb608ed6dd93ef4392e02ffe219417c1b28b5dd1f4"},
 ]
 
 [package.extras]
-docs = ["furo", "jaraco.packaging (>=9.3)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (>=3.5)", "sphinx-lint"]
-testing = ["big-O", "jaraco.functools", "jaraco.itertools", "jaraco.test", "more-itertools", "pytest (>=6,!=8.1.*)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=2.2)", "pytest-ignore-flaky", "pytest-mypy", "pytest-ruff (>=0.2.1)"]
+check = ["pytest-checkdocs (>=2.4)", "pytest-ruff (>=0.2.1)"]
+cover = ["pytest-cov"]
+doc = ["furo", "jaraco.packaging (>=9.3)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (>=3.5)", "sphinx-lint"]
+enabler = ["pytest-enabler (>=2.2)"]
+test = ["big-O", "importlib-resources", "jaraco.functools", "jaraco.itertools", "jaraco.test", "more-itertools", "pytest (>=6,!=8.1.*)", "pytest-ignore-flaky"]
+type = ["pytest-mypy"]
 
 [extras]
-all = ["matplotlib", "molbloom", "pymongo", "route-distances", "scipy", "timeout-decorator"]
+all = ["molbloom", "pymongo", "route-distances", "scipy", "timeout-decorator"]
 tf = ["grpcio", "tensorflow", "tensorflow-serving-api"]
 
 [metadata]
 lock-version = "2.0"
 python-versions = ">=3.9,<3.11"
-content-hash = "50941160f508fe1be1d9e5d96e606e569ba7aebb746ac7363e6f1126e779f9f9"
+content-hash = "429cba0c5c290d2099420d99e53fc895af366ad3d4862d13f1461ddc669eb0f6"
diff --git a/pyproject.toml b/pyproject.toml
index 5744e4f..bc22e9d 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -15,10 +15,15 @@ mccabe-complexity = 9
 
 [tool.pylint.'MESSAGES CONTROL']
 max-line-length = 120
-max-args = 7
+max-args = 8
 max-attributes = 20
 min-public-methods = 0
-disable = "W3101, R0022, W1201, W1203, R0401, W0707, W0221, W0603, R0801, R1735, W1514, C0209, W0237, R1732, W0602, R0914, typecheck"
+disable = "C0116, E0401, E1101, I1101, R0801, R0902, R0903, R0914, R1732, R1735, W0221, W0237, W0406, W0602, W0603, W0707, W1201, W1203, W1514, W3101"
+
+[tool.coverage.report]
+exclude_also = [
+    "if TYPE_CHECKING:"
+]
 
 [tool.poetry.dependencies]
 python = ">=3.9,<3.11"
@@ -36,18 +41,19 @@ rdchiral = "^1.0.0"
 rdkit = "^2022.3.3"
 tables = "^3.6.1"
 tqdm = "^4.42.1"
-onnxruntime = "^1.14.0"
+onnxruntime = "<1.17.0"
 tensorflow = {version = "^2.8.0", optional=true}
 grpcio = {version = "^1.24.0", optional=true}
 tensorflow-serving-api = {version = "^2.1.0", optional=true}
 pymongo = {version = "^3.10.1", optional=true}
 route-distances = {version = "^1.1.1", optional=true}
 scipy = {version = "^1.0", optional=true}
-matplotlib = {version = "^3.0.0", optional=true}
+matplotlib = "^3.0.0"
 timeout-decorator = {version = "^0.5.0", optional=true}
 molbloom = {version = "^2.1.0", optional=true}
 paretoset = "^1.2.3"
 seaborn = "^0.13.2"
+numpy = "<2.0.0"
 
 [tool.poetry.dev-dependencies]
 black = "^22.0.0"
@@ -58,12 +64,12 @@ pytest-cov = "^2.11.0"
 pytest-datadir = "^1.3.1"
 pytest-mock = "^3.5.0"
 pytest-mccabe = "^2.0.0"
-Sphinx = "^7.3.7"
+sphinx = "^4.0.0"
 mypy = "^1.0.0"
 pylint = "^2.16.0"
 
 [tool.poetry.extras]
-all = ["pymongo", "route-distances", "scipy", "matplotlib", "timeout-decorator", "molbloom"]
+all = ["pymongo", "route-distances", "scipy", "timeout-decorator", "molbloom"]
 tf = ["tensorflow", "grpcio", "tensorflow-serving-api"]
 
 [tool.poetry.scripts]
@@ -73,6 +79,9 @@ cat_aizynth_output = "aizynthfinder.tools.cat_output:main"
 download_public_data = "aizynthfinder.tools.download_public_data:main"
 smiles2stock = "aizynthfinder.tools.make_stock:main"
 
+[tool.coverage.run]
+relative_files = true
+
 [build-system]
 requires = ["poetry_core>=1.0.0"]
 build-backend = "poetry.core.masonry.api"

From 6415da4bb08c890742b4e3651e05db5225370e13 Mon Sep 17 00:00:00 2001
From: kpzn768 <kpzn768@wks-3f33f0.seml.astrazeneca.net>
Date: Wed, 4 Dec 2024 16:31:00 +0100
Subject: [PATCH 2/3] Update clustering gui imports

---
 docs/gui.rst      | 2 +-
 tests/test_cli.py | 2 +-
 2 files changed, 2 insertions(+), 2 deletions(-)

diff --git a/docs/gui.rst b/docs/gui.rst
index ddabec5..443a59d 100644
--- a/docs/gui.rst
+++ b/docs/gui.rst
@@ -69,7 +69,7 @@ There is a GUI extension to perform clustering of the routes. Enter the followin
 .. code-block::
 
     %matplotlib inline
-    from aizynthfinder.interfaces.gui import ClusteringGui
+    from aizynthfinder.interfaces.gui.clustering import ClusteringGui
     ClusteringGui.from_app(app)
 
 
diff --git a/tests/test_cli.py b/tests/test_cli.py
index b363a13..0be8e2d 100644
--- a/tests/test_cli.py
+++ b/tests/test_cli.py
@@ -19,7 +19,7 @@
 from aizynthfinder.tools.make_stock import main as make_stock_main
 
 try:
-    from aizynthfinder.interfaces.gui import ClusteringGui
+    from aizynthfinder.interfaces.gui.clustering import ClusteringGui
 except ImportError:
     SUPPORT_CLUSTERING = False
 else:

From 0420233fb0a54d9de697043f4f6d448d5b26f6ac Mon Sep 17 00:00:00 2001
From: kpzn768 <kpzn768@wks-3f33f0.seml.astrazeneca.net>
Date: Wed, 4 Dec 2024 16:33:27 +0100
Subject: [PATCH 3/3] Remove env-users

---
 env-users.yml | 10 ----------
 1 file changed, 10 deletions(-)
 delete mode 100644 env-users.yml

diff --git a/env-users.yml b/env-users.yml
deleted file mode 100644
index 66cc98e..0000000
--- a/env-users.yml
+++ /dev/null
@@ -1,10 +0,0 @@
-name: aizynth-env
-channels:
-  - conda-forge
-  - defaults
-dependencies:
-  - python>=3.9,<3.11
-  - git
-  - pip>=20.0
-  - pip:
-    - https://github.com/MolecularAI/aizynthfinder/archive/v3.7.0.tar.gz 
\ No newline at end of file