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I encountered a case where CheckQC couldn't tell the whole story behind incorrectly specified indexes:
Index in sample sheet:
ACATAGCG+CTAGCTTG
Index found in undetermined indexes:
CAAGCTAG+ACATAGCG
Reported by CheckQC:
Index: CAAGCTAG+ACATAGCG on lane: 1 was significantly overrepresented (5.9%) at significance threshold of: 1%.
We found a possible match for the reverse complement of tag: CAAGCTAG, on: Lane: 1, for sample: Sample_A
The tag we found was: CTAGCTTG.
This originated from the dual index tag: CAAGCTAG+ACATAGCG
It would have been helpful if it also was reported that ACATAGCG was find among index 1 in the sample sheet.
The text was updated successfully, but these errors were encountered:
I encountered a case where CheckQC couldn't tell the whole story behind incorrectly specified indexes:
Index in sample sheet:
Index found in undetermined indexes:
Reported by CheckQC:
It would have been helpful if it also was reported that
ACATAGCG
was find among index 1 in the sample sheet.The text was updated successfully, but these errors were encountered: