You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
I'm using pykilosort on extracellular cerebellar recordings, and I'm interested in complex spikes (which are spikes that can last for 3ms and sometimes more).
So I tried upping the nt0 parameter, and it worked for 61 (default) and 64, but failed for 70, 80 and 81:
13:10:24.531 [I] utils:334 Starting step learn.
Extracting templates: 100%|███████████████████████████████████████████████████████████████████████████████| 181/181 [00:08<00:00, 20.67it/s]
Optimizing templates: 0%| | 0/1810 [00:00<?, ?it/s]
Traceback (most recent call last):
File "test.py", line 36, in <module>
kilosort.run(dat_path, probe=probe, dir_path=dir_path, params=params, n_channels=64, dtype=np.int16, sample_rate=30000)
File "/users/nsr/wyngaard/.conda/envs/kilosort/lib/python3.7/site-packages/pykilosort-2.0.0a0-py3.7.egg/pykilosort/main.py", line 188, in run
out = learnAndSolve8b(ctx)
File "/users/nsr/wyngaard/.conda/envs/kilosort/lib/python3.7/site-packages/pykilosort-2.0.0a0-py3.7.egg/pykilosort/learn.py", line 737, in learnAndSolve8b
dWU, cmap = mexGetSpikes2(Params, dataRAW, wTEMP, iC)
File "/users/nsr/wyngaard/.conda/envs/kilosort/lib/python3.7/site-packages/pykilosort-2.0.0a0-py3.7.egg/pykilosort/learn.py", line 269, in mexGetSpikes2
extract_snips((Nchan,), tpS, (d_Params, d_st1, d_id1, d_counter, d_data, d_WU))
File "cupy/core/raw.pyx", line 52, in cupy.core.raw.RawKernel.__call__
File "cupy/cuda/function.pyx", line 149, in cupy.cuda.function.Function.__call__
File "cupy/cuda/function.pyx", line 131, in cupy.cuda.function._launch
File "cupy/cuda/driver.pyx", line 229, in cupy.cuda.driver.launchKernel
File "cupy/cuda/driver.pyx", line 82, in cupy.cuda.driver.check_status
cupy.cuda.driver.CUDADriverError: CUDA_ERROR_INVALID_VALUE: invalid argument
Now I know that pykilosort is still in development, and that the nt0 parameter might not be a priority.
I just thought I'd point it out in case you didn't catch that bug.
Also, the matlab version says that this parameter cannot be greater than 81. Will it be possible for the python version to go above that in the future?
Thank you,
Hope this helps
The text was updated successfully, but these errors were encountered:
Hi,
I'm using
pykilosort
on extracellular cerebellar recordings, and I'm interested in complex spikes (which are spikes that can last for 3ms and sometimes more).So I tried upping the
nt0
parameter, and it worked for 61 (default) and 64, but failed for 70, 80 and 81:Now I know that
pykilosort
is still in development, and that thent0
parameter might not be a priority.I just thought I'd point it out in case you didn't catch that bug.
Also, the matlab version says that this parameter cannot be greater than 81. Will it be possible for the python version to go above that in the future?
Thank you,
Hope this helps
The text was updated successfully, but these errors were encountered: