From 786875568cd912c2701bda946ff4e85a65824728 Mon Sep 17 00:00:00 2001 From: Erik Fasterius Date: Wed, 23 Oct 2024 15:36:54 +0200 Subject: [PATCH] Do not run Conda test GHA on MacOS ARM64 Do not run the Conda environment test on MacOS ARM64, as the `subread` package is not available there. --- .github/workflows/setup.yml | 2 ++ 1 file changed, 2 insertions(+) diff --git a/.github/workflows/setup.yml b/.github/workflows/setup.yml index e00217f2..25103353 100644 --- a/.github/workflows/setup.yml +++ b/.github/workflows/setup.yml @@ -20,8 +20,10 @@ jobs: env: [snakemake, nextflow, jupyter, quarto] include: - env: snakemake + os: ubuntu-latest # Conda on MacOS ARM64 doesn't have subread cmd: snakemake -c 1 -d tutorials/snakemake/ -s tutorials/snakemake/snakefile_mrsa.smk - env: nextflow + os: ubuntu-latest # Conda on MacOS ARM64 doesn't have subread cmd: cd tutorials/nextflow && nextflow run main_mrsa.nf - env: jupyter cmd: jupyter nbconvert --to HTML tutorials/jupyter/supplementary_material.ipynb