UFS_forcing_ensemble_generator.py netcdf import error in HERA

[AnningCheng-NOAA]

I get the following error when run UFS_forcing_ensemble_generator.py in HERA. Any clue to fix?

(env_ufsreplay) /scratch1/NCEPDEV/global/Anning.Cheng/ccpp-scm/scm/etc/scripts% ./UFS_forcing_ensemble_generator.py -d /scratch1/BMC/gmtb/CCPP-SCM/UFS_RTs/control_c192/ -sc --C_RES 192 -dt 360 -n control_c192 -lons 300 -lats 34
Traceback (most recent call last):
File "./UFS_forcing_ensemble_generator.py", line 8, in
from netCDF4 import Dataset
File "/home/Anning.Cheng/.conda/envs/env_ufsreplay/lib/python3.8/site-packages/netCDF4/init.py", line 3, in
from ._netCDF4 import *
ImportError: libjpeg.so.8: cannot open shared object file: No such file or directory

[dustinswales]

@AnningCheng-NOAA I was able to run your script w/o issue:

Is your python environment correct? (If you do a "conda list", you should see netcdf4)

[AnningCheng-NOAA]

Dustin: Attached is what I have from running conda list. netcdf is there, but I still get the error message.

…

On Fri, Jun 23, 2023 at 2:34 PM Dustin Swales ***@***.***> wrote: @AnningCheng-NOAA <https://github.com/AnningCheng-NOAA> I was able to run your script w/o issue: [image: Screen Shot 2023-06-23 at 12 30 41 PM] <https://user-images.githubusercontent.com/13949033/248349549-1c9e80de-7542-4e33-a779-7b75fd3e2768.png> Is your python environment correct? (If you do a "conda list", you should see netcdf4) — Reply to this email directly, view it on GitHub <#391 (comment)>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/ALQPMIPQXPHLJI7GV7XY26DXMXOTBANCNFSM6AAAAAAZR3WGYM> . You are receiving this because you were mentioned.Message ID: ***@***.***>

[dustinswales]

@AnningCheng-NOAA I don't see an attachment?
Can you try "conda deactivate" followed by "conda activate env_ufsreplay"?

[AnningCheng-NOAA]

I tried conda deactivate, get the same error. Could you point me to your Hera_setup_intel.csh file?

[dustinswales]

It looks like you are missing a few packages... shapely, xarray, and xesmf.
See #390 to create the correct environment

[AnningCheng-NOAA]

Dustin:

I got a xesmf not found error.

[dustinswales]

Try "xesmf", not "xesm"

[AnningCheng-NOAA]

Dustin:
The ufs replay is working now! Thank you and have a great weekend,