This repository has been archived by the owner on Jan 26, 2021. It is now read-only.
-
Notifications
You must be signed in to change notification settings - Fork 33
/
configure
executable file
·227 lines (181 loc) · 7.55 KB
/
configure
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
#!/usr/bin/env python
from __future__ import absolute_import, division, print_function
import subprocess
import os
from datetime import datetime
import argparse
import sys
from download_data import ftp_download
here = os.path.abspath(os.path.dirname(__file__))
def get_current_time():
now = datetime.now().strftime("%H:%M:%S")
return "({})".format(now)
def detect_platform():
import platform
p = {}
p["system"] = platform.system().lower()
p["node"] = platform.node().lower()
return p
def detect_existing_executable(name):
""" Check Whether `name` is on PATH. """
from distutils.spawn import find_executable
return find_executable(name)
def run_script(script, my_env, return_output=False):
process_output = subprocess.Popen(
script, env=my_env, stdout=subprocess.PIPE, stderr=subprocess.PIPE
)
out, err = process_output.communicate()
if process_output.returncode != 0:
raise RuntimeError(
"{} script failed: {} {} {}".format(
script, process_output.returncode, out.strip().decode(), err.strip().decode()
)
)
if return_output:
return out
def check_env_name_conflict(output, env_name):
import json
output = json.loads(output)["envs"]
f = lambda x: os.path.basename(x)
envs = set(map(f, output))
return env_name in envs
def prepare_env(args):
installers = {
"linux": "https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh",
"darwin": "https://repo.anaconda.com/miniconda/Miniconda3-latest-MacOSX-x86_64.sh",
}
my_env = os.environ.copy()
my_env["BASE_ENV_YML"] = os.path.join(here, "environments/env-conda-base.yml")
my_env["TUTORIAL_ENV_YML"] = os.path.join(here, "environments/env-tutorial.yml")
default_shell = my_env.get("SHELL", None)
supported_shells = {"bash", "fish", "powershell", "tcsh", "xonsh", "zsh"}
if default_shell:
default_shell = default_shell.split("/")[-1]
if default_shell in supported_shells:
my_env["INIT_SHELL"] = default_shell
conda_path = detect_existing_executable("conda")
if conda_path is not None:
print("*** Found an existing Conda installation in: {}".format(conda_path))
print("*** {} Step 1/6: Skipping Conda installation".format(get_current_time()))
my_env["INSTALL_DIR"] = os.path.abspath(os.path.join(os.path.dirname(conda_path), ".."))
else:
print("*** {} Step 1/6: Installing Miniconda".format(get_current_time()))
plat = detect_platform()
if plat["system"] in installers:
my_env["INSTALLER"] = installers[plat["system"]]
my_env["INSTALL_DIR"] = args.prefix
install_script = os.path.join(here, "conda/install_conda")
run_script(install_script, my_env)
else:
raise RuntimeError("Unsupported Platform...")
print("*** {} Step 2/6: Updating `base` environment".format(get_current_time()))
run_script(os.path.join(here, "conda/update_base_env"), my_env)
print(("*** {} Step 3/6: Checking for environment name conflict").format(get_current_time()))
output = run_script(os.path.join(here, "conda/check_env_conflict"), my_env, return_output=True)
env_exist = check_env_name_conflict(output, "python-tutorial")
if env_exist and args.clobber:
print(
(
"*** {} Step 4/6: Updating existing `python-tutorial` environment "
"(this can take several minutes)"
).format(get_current_time())
)
run_script(os.path.join(here, "conda/update_tutorial_env"), my_env)
elif env_exist and not args.clobber:
print(
"\n\nUnable to proceed to the next steps because of an existing",
"`python-tutorial` environment",
"with clobber set to {}.".format(args.clobber),
)
print("\nTo address this issue, please try one of the following options:")
print("\n(1)Create clone environment, and then remove original one:")
print("\n conda create --name new_name --clone python-tutorial")
print("\n conda remove --name python-tutorial")
print("\nOr")
print("\n(2)you can run the configure script with clobber set to True:")
print("\n ./setup/configure --clobber")
sys.exit()
else:
print(
(
"*** {} Step 4/6: Creating `python-tutorial` environment "
"(this can take several minutes)"
).format(get_current_time())
)
run_script(os.path.join(here, "conda/update_tutorial_env"), my_env)
print(
"*** {} Step 5/6: Running post build script for `base` environment".format(
get_current_time()
)
)
run_script(os.path.join(here, "conda/post_build_base"), my_env)
print(
(
"*** {} Step 6/6: Running post build script for `python-tutorial` environment "
"(this can take several minutes)"
).format(get_current_time())
)
my_env["CARTOPY_ASSET_SCRIPT"] = os.path.join(here, "download_cartopy_assets.py")
run_script(os.path.join(here, "conda/post_build_tutorial"), my_env)
print("*** {} Setup completed successfully.".format(get_current_time()))
print("==> For changes to take effect, close and re-open your current shell. <==")
def download_data():
output_dir = os.path.abspath(os.path.join(os.path.dirname(here), "data"))
local_data_locations = {
"glade": "/glade/work/abanihi/aletheia-data/tutorial-data",
"hobart": "/ftp/archive/aletheia-data/tutorial-data",
}
plat = detect_platform()
def create_symlink(local_data_location):
print(
"Creating symlink to existing/local tutorial data directory: {}".format(
local_data_location
)
)
dst = output_dir + "/"
src = os.path.join(local_data_location, "*")
cmd = " ".join(["ln", "-sf", src, dst])
print(cmd)
proc = subprocess.Popen(cmd, shell=True, stdout=subprocess.PIPE, stderr=subprocess.PIPE)
proc.wait()
if plat["node"].startswith("casper") or plat["node"].startswith("cheyenne"):
local_data_location = local_data_locations["glade"]
create_symlink(local_data_location)
elif plat["node"].startswith("hobart"):
local_data_location = local_data_locations["hobart"]
create_symlink(local_data_location)
else:
ftp_download(directory="archive/aletheia-data/tutorial-data", output_dir=output_dir)
if __name__ == "__main__":
plat = detect_platform()
if plat["node"].startswith("casper") or plat["node"].startswith("cheyenne"):
default_install_dir = "/glade/work/{}/miniconda3".format(os.environ["USER"])
else:
default_install_dir = "{}/miniconda3".format(os.environ["HOME"])
parser = argparse.ArgumentParser(
description="Set up tutorial environment.",
formatter_class=argparse.ArgumentDefaultsHelpFormatter,
)
parser.add_argument(
"--clobber",
"-c",
help="Whether to clobber existing environment",
default=False,
action="store_true",
)
parser.add_argument(
"--download",
"-d",
default=False,
help="Download tutorial data without setting environment up",
action="store_true",
)
parser.add_argument(
"--prefix", "-p", default=default_install_dir, help="Miniconda3 install location"
)
args = parser.parse_args()
if args.download:
download_data()
else:
prepare_env(args)
download_data()