diff --git a/ResultsPelicun.cpp b/ResultsPelicun.cpp
index 41fe017..41b06d7 100644
--- a/ResultsPelicun.cpp
+++ b/ResultsPelicun.cpp
@@ -388,34 +388,42 @@ int ResultsPelicun::runPelicunAfterHPC(QString &resultsDirName,
                                        QString &runDirName,
                                        QString &appDirName){
 
-  qDebug() << "after: " << resultsDirName << " \n runDirName: " << runDirName << " \nappDirNAme:" << appDirName;
-  
-    // create the workdir and copy the two result files there
+    //
+    // create workdir & copy dakotaTab.out & scInput there
+    //
+    
     if (!QDir(runDirName).exists()) {
         QDir().mkdir(runDirName);
     }
+    
     QDir runDir(runDirName);
     QDir resultsDir(resultsDirName);
+    QDir downloadDir(resultsDirName); downloadDir.cdUp(); // templateDir.cd("templatedir");
+
+    QString downloadedTemplateDir = downloadDir.absoluteFilePath("templatedir");
+    QString runTemplateDir = runDir.absoluteFilePath("templatedir");
+    QDir templateDir(runTemplateDir);
+    
+    runDir.rename(downloadedTemplateDir, runTemplateDir);
 
     QFile::copy(resultsDir.absoluteFilePath("dakotaTab.out"),
                 runDir.absoluteFilePath("dakotaTab.out"));
 
-    QString tmpDirName = runDir.absoluteFilePath("templatedir");
-    if (!QDir(tmpDirName).exists()) {
-        QDir().mkdir(tmpDirName);
-    }
-    QDir tmpDir(tmpDirName);
-
-    QFile::copy(resultsDir.absoluteFilePath("dakota.json"),
-                tmpDir.absoluteFilePath("dakota.json"));
+    QDir tmpDir(runTemplateDir);
+    QFile::copy(templateDir.absoluteFilePath("scInput.json"),
+                runDir.absoluteFilePath("scInput.json"));
 
+    //
     // run the loss assessment
+    //
+    
     QDir scriptDir(appDirName);
     scriptDir.cd("applications");
     scriptDir.cd("Workflow");
     QString pySCRIPT = scriptDir.absoluteFilePath("sWHALE.py");
+    QString createResponseCSV = scriptDir.absoluteFilePath("createResponseCSV.py");    
     QString registryFile = scriptDir.absoluteFilePath("WorkflowApplications.json");
-    QString inputFileName = tmpDir.absoluteFilePath("dakota.json");
+    QString inputFileName = runDir.absoluteFilePath("scInput.json");    
 
     QProcess *proc = new QProcess();
     SimCenterPreferences *preferences = SimCenterPreferences::getInstance();
@@ -433,14 +441,30 @@ int ResultsPelicun::runPelicunAfterHPC(QString &resultsDirName,
 
 #ifdef Q_OS_WIN
     python = QString("\"") + python + QString("\"");
+    QStringList argsCSV{createResponseCSV,"--input_file",inputFileName};
+    proc->execute(python, argsCSV);    
     QStringList args{pySCRIPT, "loss_only",inputFileName,registryFile};
     proc->execute(python, args);
 
 #else
+    
     // note the above not working under linux because basrc not being called so no env variables!!
-
-    qDebug() << "Python: " << python;
-    QString command = QString("source $HOME/.bash_profile; \"") + python + QString("\" \"") +
+    QString sourceBash("");
+    QDir homeDir(QDir::homePath());    
+    if (homeDir.exists(".bash_profile")) {
+        sourceBash = QString("source $HOME/.bash_profile; \"");
+    } else if (homeDir.exists(".bashrc")) {
+        sourceBash = QString("source $HOME/.bashrc; \"");
+    } else if (homeDir.exists(".zprofile")) {
+        sourceBash = QString("source $HOME/.zprofile; \"");
+    } else if (homeDir.exists(".zshrc")) {
+        sourceBash = QString("source $HOME/.zshrc; \"");
+    } else
+        this->errorMessage( "No .bash_profile, .bashrc, .zprofile or .zshrc file found. This may not find Dakota or OpenSees");
+    
+    QString command = sourceBash + python + QString("\" \"") +
+      createResponseCSV + QString("\" --inputFile \"") + inputFileName +
+      QString("\" > /Users/fmckenna/output.log 2>&1; \"") + python + QString("\" \"") +      
       pySCRIPT + QString("\"  \"loss_only\" \"") + inputFileName + QString("\"  \"") +
       registryFile + QString("\"");