[BUFIX] fail when passed fastas with duplicate sequence ids #555
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skothenhill-nv
requested review from
malcolmgreaves,
jstjohn,
edawson and
cspades
as code owners
…o hillst/nvfaidx-restrictions
|
/build-ci |
cspades
approved these changes
Dec 24, 2024
edawson
approved these changes
Dec 25, 2024
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When NvFaidx was used on Fasta files containing duplicate sequence ids, which violates the FASTA spec, it would silently fail and use the last-seen sequence as an entry.
This PR fails by default and exposes a parameter to ignore sequence_ids and use integer indexing instead.