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For GATK jarfile reliant scripts, set $GATK_HOME as default #364

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sylvinite opened this issue Mar 21, 2017 · 0 comments
Open

For GATK jarfile reliant scripts, set $GATK_HOME as default #364

sylvinite opened this issue Mar 21, 2017 · 0 comments

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@sylvinite
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For calls that require GATK jars, use $GATK_HOME/ per default since the environment variable gets set by module loading GATK. Then, if necessary, provide an alternative with the direct path of the GATK jar files directory
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