index.Rmd

--- 
title: "Skeena Watershed Fish Passage Restoration Planning 2022"
author: |
 |
 | Prepared for
 | Habitat Conservation Trust Foundation - CAT23-6-288
 | BC Fish Passage Remediation Program
 | Ministry of Transportation and Infrastructure
 |
 |
 | Prepared by
 | Al Irvine, B.Sc., R.P.Bio. and Mateo Wintersheidt, B.Sc.
 | New Graph Environment Ltd.
 | on behalf of
 | Society for Ecosytem Restoration in Northern British Columbia

date: |
 |
 | Version 0.1.2 `r format(Sys.Date(), "%Y-%m-%d")`
toc-title: Table of Contents
site: bookdown::bookdown_site
output: 
  bookdown::gitbook:
          includes:
            in_header: header.html
params:
 repo_url: 'https://github.com/NewGraphEnvironment/fish_passage_skeena_2022_reporting/'
 update_packages: FALSE
nocite: |
  @busch_etal2013LandscapeLevelModel, 
  @woll_etal2017SalmonEcological,
  @kirsch_etal2014Fishinventory,
  @cooney_holzer2006AppendixInterior,
  @roberge_etal2002LifeHistory,
  @sloat_etal2017Streamnetworka,
  @woll_etal2017SalmonEcological,
  @porter_etal2008DevelopingFish,
  @rosenfeld_etal2000Habitatfactorsa

documentclass: book
bibliography: [book.bib, packages.bib, references.bib]
biblio-style: apalike
link-citations: no
github-repo: rstudio/bookdown-demo
description: "Skeena Fish Passage Planning 2022"


---

```{r switch-gitbook-html, echo=FALSE}
gitbook_on <- TRUE
# gitbook_on <- FALSE  ##we just need turn  this on and off to switch between gitbook and pdf via paged.js

```

```{r setup, echo=identical(gitbook_on, TRUE), include = TRUE}
knitr::opts_chunk$set(echo=identical(gitbook_on, TRUE), message=FALSE, warning=FALSE, dpi=60, out.width = "100%")
# knitr::knit_hooks$set(webgl = hook_webgl)
options(scipen=999)
options(knitr.kable.NA = '--') #'--'
options(knitr.kable.NAN = '--')
```

```{r settings-gitbook, eval= gitbook_on}
photo_width <- "100%"
font_set <- 11

```

```{r settings-paged-html, eval= identical(gitbook_on, FALSE)}
photo_width <- "80%"
font_set <- 9
```


```{r ld-pkgs}
source('scripts/packages.R')
source('scripts/tables_2023.R')
source('scripts/tables.R')
source('scripts/moti_climate.R')
source('scripts/functions.R')
```


```{r include=FALSE}
# automatically create a bib database for R packages
knitr::write_bib(c(
  .packages(), 'bookdown', 'knitr', 'rmarkdown'
), 'packages.bib')
```

# Acknowledgement {.front-matter .unnumbered}


Modern civilization has a long journey ahead to acknowledge and address the historic and ongoing impacts of colonialism that have resulted in harm to the cultures and livelihoods living interconnected with our ecosystems for many thousands of years. 

<br>

The Society for Ecosystem Restoration in Northern British Columbia recognizes the Habitat Conservation Trust Foundation, BC Fish Passage Remediation Program and Ministry of Transportation and Infrastructure for making a significant financial contributions to supporting Skeena Watershed Fish Passage Restoration Planning. Partnerships are key to conserving BC’s wildlife, fish, and their habitats.



```{js, logo-header, echo = FALSE, eval= T}
title=document.getElementById('header');
title.innerHTML = '<img src="fig/logo_sern_hctf.png" alt="NewGraph">' + title.innerHTML
```