From d178ca5667d8c434f31e562c5369553b5acde096 Mon Sep 17 00:00:00 2001
From: Daniel Ji <jidaniel1234@gmail.com>
Date: Mon, 12 Feb 2024 21:41:14 -0800
Subject: [PATCH] fix offline instructions on site

---
 src/App.jsx      | 6 ++++--
 src/constants.js | 3 ++-
 2 files changed, 6 insertions(+), 3 deletions(-)

diff --git a/src/App.jsx b/src/App.jsx
index f8c7882..d9a8d9d 100644
--- a/src/App.jsx
+++ b/src/App.jsx
@@ -12,7 +12,8 @@ import {
 	MINIMAP2_VERSION,
 	FASTP_VERSION,
 	OFFLINE_INSTRUCTIONS,
-	OFFLINE_INSTRUCTIONS_KEYWORDS,
+	OFFLINE_INSTRUCTIONS_KEYWORDS_START,
+	OFFLINE_INSTRUCTIONS_KEYWORDS_END,
 	REF_GENOMES_DIR,
 	REF_GENOME_REPO_STRUCTURE_LINK,
 	CLEAR_LOG,
@@ -147,7 +148,8 @@ export class App extends Component {
 		const res = await fetch(`${window.location.origin}${import.meta.env.BASE_URL || ''}${OFFLINE_INSTRUCTIONS}`);
 		const text = await res.text();
 		const html = marked(text);
-		const offlineInstructions = html.slice(html.indexOf(OFFLINE_INSTRUCTIONS_KEYWORDS) + OFFLINE_INSTRUCTIONS_KEYWORDS.length)
+		let offlineInstructions = html.slice(html.indexOf(OFFLINE_INSTRUCTIONS_KEYWORDS_START) + OFFLINE_INSTRUCTIONS_KEYWORDS_START.length)
+		offlineInstructions = offlineInstructions.slice(0, offlineInstructions.indexOf(OFFLINE_INSTRUCTIONS_KEYWORDS_END))
 		this.setState({ offlineInstructions });
 	}
 
diff --git a/src/constants.js b/src/constants.js
index f67465b..87a5e38 100644
--- a/src/constants.js
+++ b/src/constants.js
@@ -7,7 +7,8 @@ export const REF_GENOMES_DIR = "data/Reference-Genomes/";
 export const REF_GENOME_REPO_STRUCTURE_LINK = "data/REFS.json";
 
 export const OFFLINE_INSTRUCTIONS = "/README.md";
-export const OFFLINE_INSTRUCTIONS_KEYWORDS = "<h3>ViralWasm-Consensus Offline</h3>\n";
+export const OFFLINE_INSTRUCTIONS_KEYWORDS_START = "<h2>ViralWasm-Consensus Offline</h2>\n";
+export const OFFLINE_INSTRUCTIONS_KEYWORDS_END = "<h2>Citing ViralWasm-Consensus</h2>\n";
 export const BIOWASM_WORKING_DIR = "/shared/data/";
 export const OUTPUT_ID = "output-text";
 export const EXAMPLE_REF = "NC_045512"; // SARS-CoV-2 (COVID-19)