diff --git a/EESSI-install-software.sh b/EESSI-install-software.sh index ca6fed71d5..96978ca500 100755 --- a/EESSI-install-software.sh +++ b/EESSI-install-software.sh @@ -256,6 +256,12 @@ if command_exists "nvidia-smi"; then ${EESSI_PREFIX}/scripts/gpu_support/nvidia/link_nvidia_host_libraries.sh fi +# Install extra software that is needed (e.g., for providing a custom ctypes +# library when needed) +cd ${TOPDIR}/scripts/extra +./install_extra_packages.sh --temp-dir /tmp/temp --easystack eessi-2023.06-extra-packages.yml +cd ${TOPDIR} + # use PR patch file to determine in which easystack files stuff was added changed_easystacks=$(cat ${pr_diff} | grep '^+++' | cut -f2 -d' ' | sed 's@^[a-z]/@@g' | grep '^easystacks/.*yml$' | egrep -v 'known-issues|missing') if [ -z "${changed_easystacks}" ]; then diff --git a/easystacks/pilot.nessi.no/2023.06/eessi-2023.06-eb-4.9.1-2023a.yml b/easystacks/pilot.nessi.no/2023.06/eessi-2023.06-eb-4.9.1-2023a.yml index 4f31c4dd08..c01439e791 100644 --- a/easystacks/pilot.nessi.no/2023.06/eessi-2023.06-eb-4.9.1-2023a.yml +++ b/easystacks/pilot.nessi.no/2023.06/eessi-2023.06-eb-4.9.1-2023a.yml @@ -55,3 +55,4 @@ easyconfigs: - PyTorch-2.1.2-foss-2023a-CUDA-12.1.1.eb: options: cuda-compute-capabilities: 6.0,6.1,7.0,7.5,8.0,8.6,8.9,9.0 + - librosa-0.10.1-foss-2023a.eb diff --git a/eb_hooks.py b/eb_hooks.py index e4a957acdc..58523f160b 100644 --- a/eb_hooks.py +++ b/eb_hooks.py @@ -5,6 +5,7 @@ import easybuild.tools.environment as env from easybuild.easyblocks.generic.configuremake import obtain_config_guess +from easybuild.easyblocks.python import EXTS_FILTER_PYTHON_PACKAGES from easybuild.framework.easyconfig.constants import EASYCONFIG_CONSTANTS from easybuild.tools.build_log import EasyBuildError, print_msg from easybuild.tools.config import build_option, update_build_option @@ -349,6 +350,30 @@ def parse_hook_lammps_remove_deps_for_CI_aarch64(ec, *args, **kwargs): raise EasyBuildError("LAMMPS-specific hook triggered for non-LAMMPS easyconfig?!") +def parse_hook_librosa_custom_ctypes(ec, *args, **kwargs): + """ + Add exts_filter to soundfile extension in exts_list + """ + if ec.name == 'librosa' and ec.version in ('0.10.1',): + ec_dict = ec.asdict() + eessi_software_path = get_eessi_envvar('EESSI_SOFTWARE_PATH') + custom_ctypes_path = os.path.join(eessi_software_path, "software", "custom_ctypes", "1.2") + ebpythonprefixes = "EBPYTHONPREFIXES=%s" % custom_ctypes_path + exts_list_new = [] + for item in ec_dict['exts_list']: + if item[0] == 'soundfile': + ext_dict = item[2] + ext_dict['exts_filter'] = (ebpythonprefixes + ' ' + EXTS_FILTER_PYTHON_PACKAGES[0], + EXTS_FILTER_PYTHON_PACKAGES[1]) + exts_list_new.append((item[0], item[1], ext_dict)) + else: + exts_list_new.append(item) + ec['exts_list'] = exts_list_new + print_msg("New exts_list: '%s'", ec['exts_list']) + else: + raise EasyBuildError("librosa/0.10.1-specific hook triggered for non-librosa/0.10.1 easyconfig?!") + + def pre_prepare_hook_highway_handle_test_compilation_issues(self, *args, **kwargs): """ Solve issues with compiling or running the tests on both @@ -852,6 +877,35 @@ def inject_gpu_property(ec): return ec +def pre_module_hook(self, *args, **kwargs): + """Main pre-module-check hook: trigger custom functions based on software name.""" + if self.name in PRE_MODULE_HOOKS: + PRE_MODULE_HOOKS[self.name](self, *args, **kwargs) + + +def pre_module_hook_librosa_augment_modluafooter(self, *args, **kwargs): + """ + Add EBPYTHONPREFIXES to modluafooter + """ + if self.name == 'librosa' and self.version == '0.10.1': + eessi_software_path = get_eessi_envvar('EESSI_SOFTWARE_PATH') + custom_ctypes_path = os.path.join(eessi_software_path, "software", "custom_ctypes", "1.2") + key = 'modluafooter' + values = ['prepend_path("EBPYTHONPREFIXES","%s")' % (custom_ctypes_path)] + print_msg("Adding '%s' to modluafooter", values[0]) + if not key in self.cfg: + self.cfg[key] = '\n'.join(values) + else: + new_value = self.cfg[key] + for value in values: + if not value in new_value: + new_value = '\n'.join([new_value, value]) + self.cfg[key] = new_value + print_msg("Full modluafooter is '%s'", self.cfg[key]) + else: + raise EasyBuildError("librosa/0.10.1-specific hook triggered for non-librosa/0.10.1 easyconfig?!") + + PARSE_HOOKS = { 'casacore': parse_hook_casacore_disable_vectorize, 'CGAL': parse_hook_cgal_toolchainopts_precise, @@ -859,6 +913,7 @@ def inject_gpu_property(ec): 'GPAW': parse_hook_gpaw_harcoded_path, 'ImageMagick': parse_hook_imagemagick_add_dependency, 'LAMMPS': parse_hook_lammps_remove_deps_for_CI_aarch64, + 'librosa': parse_hook_librosa_custom_ctypes, 'OpenBLAS': parse_hook_openblas_relax_lapack_tests_num_errors, 'Pillow-SIMD' : parse_hook_Pillow_SIMD_harcoded_paths, 'pybind11': parse_hook_pybind11_replace_catch2, @@ -909,3 +964,7 @@ def inject_gpu_property(ec): 'cuDNN': post_sanitycheck_cudnn, 'cuTENSOR': post_sanitycheck_cutensor, } + +PRE_MODULE_HOOKS = { + 'librosa': pre_module_hook_librosa_augment_modluafooter, +} diff --git a/scripts/extra/custom_ctypes-1.2.eb b/scripts/extra/custom_ctypes-1.2.eb new file mode 100644 index 0000000000..35be6dcc41 --- /dev/null +++ b/scripts/extra/custom_ctypes-1.2.eb @@ -0,0 +1,29 @@ +## +# This is a contribution from the NESSI project +# Homepage: https://documentation.sigma2.no +# +# Authors:: Thomas Roeblitz +# License:: GPL-2.0-only +# +## + +easyblock = 'Tarball' + +name = 'custom_ctypes' +version = '1.2' + +homepage = 'https://github.com/ComputeCanada/custom_ctypes' +description = """custum_ctypes is a small Python package to fix the discovery of libraries with Python's ctypes module. It changes the behavior of find_library to return absolute paths to shared objects rather than just the names.""" + +toolchain = SYSTEM + +source_urls = ['https://github.com/ComputeCanada/custom_ctypes/archive/refs/tags'] +sources = ['%(version)s.tar.gz'] +checksums = ['3b30ce633c6a329169f2b10ff24b8eaaeef3fa208a66cdacdb53c22f02a88d9b'] + +sanity_check_paths = { + 'files': ['README.md'], + 'dirs': ['lib'], +} + +moduleclass = 'lib' diff --git a/scripts/extra/eessi-2023.06-extra-packages.yml b/scripts/extra/eessi-2023.06-extra-packages.yml new file mode 100644 index 0000000000..22670ec7a3 --- /dev/null +++ b/scripts/extra/eessi-2023.06-extra-packages.yml @@ -0,0 +1,2 @@ +easyconfigs: + - custom_ctypes-1.2.eb diff --git a/scripts/extra/install_extra_packages.sh b/scripts/extra/install_extra_packages.sh new file mode 100755 index 0000000000..18e4903edf --- /dev/null +++ b/scripts/extra/install_extra_packages.sh @@ -0,0 +1,94 @@ +#!/usr/bin/env bash + +# This script can be used to install extra packages under ${EESSI_SOFTWARE_PATH} + +# some logging +echo ">>> Running ${BASH_SOURCE}" + +# Initialise our bash functions +TOPDIR=$(dirname $(realpath ${BASH_SOURCE})) +source "${TOPDIR}"/../utils.sh + +# Function to display help message +show_help() { + echo "Usage: $0 [OPTIONS]" + echo "Options:" + echo " --help Display this help message" + echo " -e, --easystack EASYSTACKFILE Easystack file which specifies easyconfigs to be installed." + echo " -t, --temp-dir /path/to/tmpdir Specify a location to use for temporary" + echo " storage during the installation" +} + +# Initialize variables +TEMP_DIR= +EASYSTACK_FILE= + +# Parse command-line options +while [[ $# -gt 0 ]]; do + case "$1" in + --help) + show_help + exit 0 + ;; + -e|--easystack) + if [ -n "$2" ]; then + EASYSTACK_FILE="$2" + shift 2 + else + echo "Error: Argument required for $1" + show_help + exit 1 + fi + ;; + -t|--temp-dir) + if [ -n "$2" ]; then + TEMP_DIR="$2" + shift 2 + else + echo "Error: Argument required for $1" + show_help + exit 1 + fi + ;; + *) + show_help + fatal_error "Error: Unknown option: $1" + ;; + esac +done + +if [[ -z ${EASYSTACK_FILE} ]]; then + show_help + fatal_error "Error: need to specify easystack file" +fi + +# Make sure NESSI is initialised +check_eessi_initialised + +# As an installation location just use $EESSI_SOFTWARE_PATH +export NESSI_CVMFS_INSTALL=${EESSI_SOFTWARE_PATH} + +# we need a directory we can use for temporary storage +if [[ -z "${TEMP_DIR}" ]]; then + tmpdir=$(mktemp -d) +else + mkdir -p ${TEMP_DIR} + tmpdir=$(mktemp -d --tmpdir=${TEMP_DIR} extra.XXX) + if [[ ! -d "$tmpdir" ]] ; then + fatal_error "Could not create directory ${tmpdir}" + fi +fi +echo "Created temporary directory '${tmpdir}'" + +# load EasyBuild +ml EasyBuild + +# load NESSI-extend/2023.06-easybuild +ml NESSI-extend/2023.06-easybuild + +eb --show-config + +eb --easystack ${EASYSTACK_FILE} --robot + +# clean up tmpdir +rm -rf "${tmpdir}"