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AERS CUI--> SNOMED Map #68

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ericaVoss opened this issue Jul 22, 2015 · 1 comment
Open

AERS CUI--> SNOMED Map #68

ericaVoss opened this issue Jul 22, 2015 · 1 comment

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@ericaVoss
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We need to use UMLS to get from CUI to SNOMED. CUIs can map to many SNOMEDs. We were selecting the MAX(SNOMED) in this CUI/SNOMED lookup. However I can use the Vocab to be a tad bit smarter, I can ask for all CUI-SNOMED associations from UMLS, then asked the Vocab which SNOMEDs are CONDITIONS and then make a choice in situations where there are still multiple CUI/SNOMED mapps. In the case of Rhabdo this gets me away from the OBSERVATION domain and into the CONDITION domain.

  • `C0035410' - CUI
  • 4230337;"Rhabdomyolysis" - SNOMED - Observation
  • 4345578;"Rhabdomyolysis" - SNOMED - Condition
@cgreich
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cgreich commented Jul 22, 2015

You can also test for the "social life", i.e. how many siblings and children a target concept has. SNOMED lets many of it's redundant concepts die a slow death, meaning, it strips all of the relatives and only then deprecates it.

@rkboyce rkboyce modified the milestone: January 2016 Data Load Dec 2, 2015
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