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Finding outcome definitions, their concept sets, and how to translate those to ICD-10 code #13

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111yunxiang opened this issue Aug 10, 2022 · 4 comments
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@111yunxiang
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i cannot find the SNOMED ID the articiles showed

@schuemie
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Which SNOMED IDs are you specifically looking for? Which paper specifically are you referring to?

@111yunxiang
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111yunxiang commented Aug 11, 2022 via email

@schuemie
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Translating the concept sets to ICD-10 codes can be done with the following steps:

  1. Go the cohorts folder.
  2. Open the JSON file of your outcome of interest, and copy the content to your clipboard
  3. Go to an ATLAS instance, for example the public OHDSI ATLAS.
  4. Click 'Cohort Definitions', then 'New Cohort'.
  5. Open the 'Export' tab, select 'JSON', and replace the JSON in the edit box with the JSON on your clipboard.
  6. Click 'Reload'.
  7. Go to the 'Concept Sets' tab, select the concept set you're interested in, and click on 'Included source codes'.
  8. Under 'Vocabulary', select 'ICD10M'.
  9. The 'Code' column now contains the ICD-10 codes

@schuemie schuemie changed the title SNOMED CONCEPT ID why is wrong? Finding outcome definitions, their concept sets, and how to translate those to ICD-10 code Aug 11, 2022
@schuemie schuemie added the question Further information is requested label Aug 11, 2022
@111yunxiang
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111yunxiang commented Aug 11, 2022 via email

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