generated from OuhscBbmc/cdw-template-1
-
Notifications
You must be signed in to change notification settings - Fork 0
/
.gitignore
116 lines (94 loc) · 2.77 KB
/
.gitignore
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
# ---- R and RStudio files -----------------------------------------------
.Rproj.user/
.Rhistory
.RData
.Rdata
.Ruserdata
.Rapp.history
.Renviron
.XPT
.Xpt
.xpt
# Output files from R CMD build
/*.tar.gz
# Output files from R CMD check
/*.Rcheck/
# R package temporary files
inst/doc
vignettes/*.html
vignettes/*.pdf
vignettes/*.R
# The devtools zip is downloaded when the package is updating itself. If it's not deleted, there's no reason to commit it to the repository.
devtools.zip
# OAuth2 token, see https://github.com/hadley/httr/releases/tag/v0.3
.httr-oauth
# Temporary files created by R markdown
*.utf8.md
*.knit.md
# Example code in package build process
*-Ex.R
# Shiny token, see https://shiny.rstudio.com/articles/shinyapps.html
rsconnect/
# ---- Protected Information -----------------------------------------------
# see cubuspl42's answer in http://stackoverflow.com/questions/2415873/exceptions-in-gitignore
/unshared-material/*
/data-unshared/*
/data/unshared/*
# Dataset Exceptions
!utility/package-dependency-list.csv
# Keep the README files in the unshared directories.
# They provide documentation, and also force the directories to be created on other machines.
# Depending on how you do it, you might need to add w/ the command line
# eg, `git add -f ./data-unshared/raw/README.md`
!README.md
!data-unshared/contents.md
!data-unshared/raw/README.md
!data-unshared/derived/README.md
!data/unshared/contents.md
!data/unshared/raw/README.md
!data/unshared/derived/README.md
# ---- Caches -----------------------------------------------
# Exclude caches in case they contain PHI
cache/
# knitr and RMarkdown default cache directories
*_cache/
# ---- Windows OS --------------------------------------------
# Cached small image files
Thumbs.db
# Folder config file
Desktop.ini
# ---- OS X --------------------------------------------------
.DS_Store
# ---- Visual Studio Code (text editor) ----------------------
.vscode/
!.vscode/settings.json
!.vscode/launch.json
# ---- Locks ----------------------
# Do not commit lock files.
# Programs like Microsoft Word create temporary files that don't contain info useful to the repo.
~*.tmp
~*.temp
# Temporary files of Microsoft Office.
~*.doc
~*.docx
~*.xlsx
~*.pptx
*.ldb
*.laccdb
# Temporary locks used by LibreOffice.
*.odb.lck
.~*.csv#
.~*.odf#
.~*.odp#
.~*.ods#
.~*.odt#
.~*.doc#
.~*.docx#
.~*.pptx#
.~*.xlsx#
# ---- Accidentally Added Code -------------------------------
# The GitHub desktop client makes it easy to right-click a file and select 'ignore'.
# This will append the file name to the bottom of `.gitignore`.
# So the lines below should either be
# 1. removed (because they were added unintentionally), or
# 2. reorganized and moved above this chunk (so it won't be confused with files added unintentionally).