deploy-data-into-image.def

Bootstrap: localimage
From: images/p3-runtime3.2019-0905.sif

%setup

	mkdir -p ${SINGULARITY_ROOTFS}/opt/patric-common/data
	mkdir -p ${SINGULARITY_ROOTFS}/opt/patric-common/data/kmers
	rsync -arv --exclude \*.nr /disks/patric-common/data/NR ${SINGULARITY_ROOTFS}/opt/patric-common/data

%files

	/vol/core-seed/kmers/core.2018-0531/Data.2 /opt/patric-common/data/kmers/core.2015-0818
	/disks/patric-common/genemark/genemark-2016-1110/genemark-license/genemark_suite_linux_64/gmsuite /opt/patric-common/gmsuite
	/disks/patric-common/data/Virulence /opt/patric-common/data/Virulence
	/disks/patric-common/data/mlstdb-2015-1123 /opt/patric-common/data/mlstdb-2015-1123

%post