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Unfortunately, the nucleotide level isn't supported. That is something I would be interested in adding (assuming I can find the time). It would probably be best implemented in html5 canvas. It would also be nice if the sequences were loaded on demand and/or in the background.
I played around with your demo, which I think it is a great tool, taking mauve to the next-level.
I was wondering if the tool also supports from the whole genome view down to the nucleotide level?
Thank you for creating mauve-viewer.
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