MathSACpr2014.tex

% arara: pdflatex
% arara: bibtex
% arara: makeglossaries
% arara: pdflatex
% arara: pdflatex
% !arara: indent: {overwrite: yes, trace: on}
\documentclass[11pt,twoside]{report}
%= == == == == == == == == == == =
%
% Document details: Program review for the mathematics department
%       at Portland Community College, Portland OR
%
%       Prepared in Fall 2013, Winter 2014
%
%= == == == == == == == == == == =
% binding offset was originally set to 1cm- killed it to 0cm as 
% we were told that most folks won't print it.
\usepackage[headheight=14pt,left=3.5cm,right=2.0cm,showframe=false,
top=2cm,bottom=1.5cm,asymmetric=true,bindingoffset=0cm]{geometry}               
\usepackage{parskip}
\usepackage{titlesec}                   % customize headings
\usepackage{titletoc}                   % customize tableofcontents
\usepackage{multirow}                   % multirows in tables
\usepackage{booktabs}                   % beautiful tables
\usepackage{multicol}		% multicols environment
\usepackage[super]{nth}			% \nth{1} etc for 1st etc
\usepackage{flafter}                    % floats won't appear until after they appear in the code
\usepackage[figuresright]{rotating}     % sideways table
\usepackage{longtable}                  % tables that can break across pages
\usepackage{tabularx}
\usepackage{fancyhdr}                   % headers and footers
\usepackage{standalone}                 % maintain graphs and tables in separate files
\usepackage{pdfpages}                   % include separate pdf documents
\usepackage{enumitem}                   % customization of list environments
\usepackage{changepage}                 % adjust margins for selected portions
\usepackage{tablefootnote}              % footnotes within tables
\usepackage[sc,hang]{caption}           % customize captions of tables and figures
\usepackage{subcaption}                 % subfigures and subtables
\usepackage[charter]{mathdesign}        % font choice
\usepackage{microtype}                  % better kerning
\usepackage{siunitx}                    % elegant handling of units
\usepackage{pgfplotstable}              % typeset tables intelligently
\usetikzlibrary{shapes}
\usetikzlibrary{positioning}
\usepackage{afterpage}			%helps with rotating the pdf by 90 deg for sideways tables
\usepackage{colortbl}										% row colours in tables
\usepackage{tcolorbox}
\usepackage{etoolbox}
\usepackage{epigraph}                   % for inspirational quotes
\usepackage[backend=bibtex,maxnames=99]{biblatex}   % bibliography
\usepackage{varioref}                   % good for referencing things 'far away'
\usepackage{hyperref}                   % hyperlinks
\usepackage{pdfcomment}		% for inserting of tooltips, like with fix this items
\usepackage[numbered]{bookmark}
\usepackage{cleveref}                   % allows \cref and friends
% fairwell refcheck- you have served us well
%\usepackage{refcheck}                   % checks if labels have been used remove once the document is completed
%\usepackage[left]{showlabels}
%\showlabels{hypertarget}
%\showlabels{hyperlink}

% tcolorbox libraries
\tcbuselibrary{breakable,skins}

% hyperlink setup
\hypersetup{colorlinks=true,
	linkcolor=blue,
	citecolor=black,
}

% bibliography settings
\addbibresource{pccbib}

% cleveref settings
\crefname{table}{Table}{Tables}
\Crefname{table}{Table}{Tables}
\crefname{figure}{Figure}{Figures}
\Crefname{figure}{Figure}{Figures}
\crefname{chapter}{Section}{Sections}
\Crefname{chapter}{Section}{Sections}
\crefname{section}{Section}{Sections}
\Crefname{section}{Section}{Sections}
\crefname{appendix}{Appendix}{Appendices}
\Crefname{appendix}{Appendix}{Appendices}

% graphics path
\graphicspath{{./graphics/}}

% axis style, ticks, etc
\pgfplotsset{every axis/.append style={
	legend cell align=left,       % otherwise width won't be as intended: http://tex.stackexchange.com/questions/36297/pgfplots-how-can-i-scale-to-text-width
}}

% percentage style for tables
\pgfplotstableset{percentstyle/.style={
	preproc/expr={##1*100},
	dec sep align,fixed,fixed zerofill,
	postproc cell content/.append code={
		\ifx\\##1\\% check if ##1 is empty
		\else
		\ifnum1=\pgfplotstablepartno
		\pgfkeysalso{@cell content/.add={}{\,\%}}%
		\fi
		\fi
	},
	precision=0,
	},
	sectionFTPT/.style={
		every head row/.style={
			before row={%
				\toprule
			},
			after row=\midrule},
		every last row/.style={after row=\bottomrule},
		columns/campus/.style={string type,column name={},column type=l},
		columns/status/.style={string type,column name={},column type=l},
		columns/below100/.style={column name={Below 100 level},column type=r},
		columns/b100percent/.style={column name={\%},percentstyle},
		columns/above100/.style={column name={Above 100 level},column type=r},
		columns/a100percent/.style={column name={\%},percentstyle},
		columns/totpercent/.style={column name={\%},percentstyle},
		columns/total/.style={column name={Total},column type=r},
	},
	demographic/.style={
	every row no 2/.style={before row=\rowcolor{lightgray!50}},
every row no 6/.style={before row=\rowcolor{lightgray!50}},
every row no 8/.style={before row=\rowcolor{lightgray!50}},
every row no 10/.style={before row=\rowcolor{lightgray!50}},
every row no 12/.style={before row=\rowcolor{lightgray!50}},
every row no 16/.style={before row=\rowcolor{lightgray!50}},
every row no 18/.style={before row=\rowcolor{lightgray!50}},
every row no 20/.style={before row=\rowcolor{lightgray!50}},
	}
}

% for the section counters for each chapter
\newcommand{\numbertotext}[1]{%
	\ifcase#1
	zero%
	\or
	one%
	\or
	two%
	\or
	three%
	\or
	four%
	\or
	five%
	\or
	six%
	\else
	% we don't care about the number of sections in chapters greater than 6
	unimportant
	\fi
}

% empty column type- very useful for big tables that ignore columns
\newcolumntype{H}{>{\setbox0=\hbox\bgroup}c<{\egroup}@{}}

% centered columns for tabularx in the appendix
\newcolumntype{Y}{>{\centering\arraybackslash}X}

% right-justified columns for tabularx 
\newcolumntype{R}{>{\raggedleft\arraybackslash}X}

% glossaries settings- load after hyperref: http://tex.stackexchange.com/questions/1863/which-packages-should-be-loaded-after-hyperref-instead-of-before
\usepackage[nonumberlist,section=chapter,toc,]{glossaries}
% use longragged style, based on longtable
\usepackage{glossary-longragged}
\setglossarystyle{longragged}
% widen description column
\setlength{\glsdescwidth}{0.8\linewidth}
% make entries bold and black
\renewcommand{\glsnamefont}[1]{\textbf{#1}}
\renewcommand*{\glstextformat}[1]{\textcolor{black}{#1}} 
% basic vocab
\newglossaryentry{ACCEPT}{name=ACCEPT,description={Addressing the Collective Climate and Experience of Part-Timers}}
\newglossaryentry{ADA}{name=ADA,description={Americans with Disabilities Act}}
\newglossaryentry{ALC}{name=ALC,description={Alternative Learning Center. A former name for the SLC. Several self-paced courses in Math and English have this subject prefix}}
\newglossaryentry{ALEKS}{name=ALEKS,description={ {\bfseries A}ssessment and {\bfseries LE}arning in {\bfseries K}nowledge {\bfseries S}paces interactive computer-based math-learning program owned by McGraw-Hill \url{http://www.aleks.com/}}}
\newglossaryentry{AMP}{name=AMP,description={Accelerated Mathematics Program}}
\newglossaryentry{AY}{name=AY,description={Academic Year}} 
\newglossaryentry{CIC}{name=CIC,description={Completion Investment Council}} 
\newglossaryentry{CTE}{name=CTE,description={Career Technical Education}} 
\newglossaryentry{OSD}{name=OSD,description={Office of Students with Disabilities}} 
\newglossaryentry{CCOG}{name=CCOG,description={Course Curriculum and Outcome Guide}} 
\newglossaryentry{DL}{name=DL,description={Distance Learning}} 
\newglossaryentry{DOI}{name=DOI,description={Deans Of Instruction}}
\newglossaryentry{F2F}{name=F2F,description={Face-to-face}} 
\newglossaryentry{FT}{name=FT,description={Full-time (usually in reference to faculty)}} 
\newglossaryentry{LAC}{name=LAC,description={Learning Assessment Council}} 
\newglossaryentry{LAS}{name=LAS,description={Learning Assessment Subcommittee (of the LAC)}} 
\newglossaryentry{LDC}{name=LDC,description={Lower Division Collegiate}} 
\newglossaryentry{MML}{name=MML,description={MyMathLab: a commercial computer-based homework management system owned and distributed by Pearson \url{http://www.pearsonmylabandmastering.com/northamerica/mymathlab/}}}
\newglossaryentry{MSL}{name=MSL,description={MyStatLab: a commercial computer-based homework management system owned and distributed by Pearson \url{http://www.pearsonmylabandmastering.com/northamerica/mystatlab/}}}
\newglossaryentry{PT}{name=PT,description={Part-time (usually in reference to faculty)}} 
\newglossaryentry{SAC}{name=SAC,description={Subject Area Committee}}
\newglossaryentry{SLC}{name=SLC,description={Student Learning Center. An informal, open study area, with the added benefit of tutoring assistance}}
\newglossaryentry{STEM}{name=STEM,description={Science, Technology, Engineering, and Mathematics}}
\newglossaryentry{WRC}{name=WRC,description={Women's Resource Center}}
\makeglossaries

% to do: (bash scripts/logfilecheck.sh)
%   - address all fixthis issues (check output and .log file) Chris
%   - check for undefined references, multiply defined labels- grep log file Chris
%   - check functionality in various browsers, OSs

% Define fix command
% 	- it puts a comment in the margin
% 	- it writes to a file with a list of things that need fixing
\newcommand{\fixthis}[1]
{%
	\marginpar{\huge \color{red} \pdftooltip{\framebox{FIX}}{#1}}%
	\typeout{FIXTHIS: Section \thechapter:  p\thepage : #1^^J}%
}

% for the section pictures
\makeatletter
\newcommand{\cmh}[2]{%
	% we need the first argument to be a number
	% http://tex.stackexchange.com/questions/50111/how-to-check-if-the-value-of-a-parameter-is-a-number
	\if\relax\detokenize\expandafter{\romannumeral-0#1}\relax
	\@ifundefined{c@totalsections@\numbertotext{#1}}%
	{%
		\newcounter{totalsections@\numbertotext{#1}}
		\setcounter{totalsections@\numbertotext{#1}}{#2}
		\typeout{Defining a new counter: totalsections@\numbertotext{#1}} 
	}%
	{%
		\ifnum\value{totalsections@\numbertotext{#1}}=#2
		\typeout{Total sections for Chapter #1 match auxilary file (#2)}
		\else
		\typeout{Warning: total sections for Chapter #1 updated from \the\value{totalsections@\numbertotext{#1}} to #2-- recompile to fix}  
		\fi
		\setcounter{totalsections@\numbertotext{#1}}{#2}
	}%
	\else
	\fi
}

% custom petal shape
% custom petal shape
% custom petal shape
% http://tex.stackexchange.com/questions/151962/rotating-a-custom-shape-independently-of-the-text/151978?noredirect=1#151978
\pgfkeys{/pgf/shape border rotate/.initial=0}

\pgfdeclareshape{petal}
{
	\inheritsavedanchors[from=circle] % this is nearly a circle
	\inheritanchorborder[from=circle]
	\inheritanchor[from=circle]{center}
	\inheritanchor[from=circle]{base}
	\savedmacro\petalparameters{%
		\pgfmathsetmacro\shapeborderrotate{\pgfkeysvalueof{/pgf/shape border rotate}}%
		\addtosavedmacro\shapeborderrotate%
	}
	\backgroundpath{
		% origin
		\petalparameters%
		{% Make sure transformations are  inside group.
			\pgftransformshift{\centerpoint}%
			\pgftransformrotate{\shapeborderrotate}%
			\pgfutil@tempdima=\radius%
			\pgfpathmoveto{\pgfqpoint{\pgfutil@tempdima}{0pt}}%
			\pgfpatharc{0}{180}{\pgfutil@tempdima}%
			\pgfpathcurveto{\pgfqpoint{-\pgfutil@tempdima}{-.5\pgfutil@tempdima}}%
			{\pgfqpoint{-.5\pgfutil@tempdima}{-.75\pgfutil@tempdima}}%
			{\pgfqpoint{0pt}{-1.5\pgfutil@tempdima}}
			\pgfpathcurveto{\pgfqpoint{0pt}{-.75\pgfutil@tempdima}}%
			{\pgfqpoint{\pgfutil@tempdima}{-.75\pgfutil@tempdima}}%
			{\pgfqpoint{\pgfutil@tempdima}{0pt}}%
		}%
	}
}

% boolean switch to tell if we're in the appendix or not
\newbool{inappendix}

% make epigraph italic
\let\oldepigraph\epigraph
\renewcommand{\epigraph}[2]{\oldepigraph{\itshape #1}{#2}}

% write to the auxilary file before each \chapter command
\preto\chapter{%
	\ifnum\value{chapter}>0
	\immediate\write\@auxout{%
		\string\cmh\string{\thechapter\string}\string{\the\value{section}\string}
	}
	\fi
}

% ... and the appendix- the above command won't work because the appendix
% command resets the chapter counter
\preto\appendix{%
    \booltrue{inappendix}
	\immediate\write\@auxout{%
		\string\cmh\string{\thechapter\string}\string{\the\value{section}\string}
	}
}

% colorbox settings
\tcbset{
	pccstyle/.style={
        % used in chapter headings and toc headings
		enhanced,flushright upper,
		boxrule=1.4pt,
		colback=white,colframe=black!50!yellow,
		drop fuzzy midday shadow=black!50!yellow
	},
    tocstyle/.style={
        % used to surround the tocs (main and appendix)
        breakable,enhanced,fonttitle=\bfseries\Large,
        colback=gray!10,colframe=gray,%colframe=red!50!black,
        before=\par\bigskip\noindent,
        pad at break=3mm,
        %left=0.75cm,
        %enlargepage=2\baselineskip,
        drop fuzzy shadow,
    }
}

% heading settings
% heading settings
% heading settings

% from the titlesec package
%\titleformat{ command }
%             [ shape ]
%             { format }{ label }{ sep }{ before-code }[ after-code ]
% custom chapter
\titleformat{\chapter}
{\normalfont\Large\filleft\bfseries}                    % format applied to label+text
{}                                                      % label
{1pc}                                                   % horizontal separation between label and title body
{%
		% add heading recommendation file
    \ifbool{inappendix}{}{%
    \ifnum\value{chapter}<7
    \ifnum\value{chapter}>0
    \addcontentsline{toc}{pcctitle}{Recommendations for section \thechapter}%
    \fi
    \fi
    }%
		% draw a box around the chapter number
	\begin{tcolorbox}[pccstyle,width=2.8cm]
		\resizebox{2cm}{!}{\color{gray!80}\thechapter}%
	\end{tcolorbox}\Huge} % before the title body
%\resizebox{2cm}{!}{\color{gray!80}\thechapter}\\\Huge} % before the title body
[]                                                      % after the title body

% \chapter*
\titleformat{name=\chapter,numberless}
{\normalfont\huge\bfseries}{}{-20pt}{\Huge}

% custom section
\titleformat{\section}
{%
    \hypertarget{section:petal:\thechapter:\thesection}%
    \large\bfseries%
}
{%
	% original line- maybe we'll just use it after all :)
	%\llap{\vbox to 5pt{\hbox{\resizebox{1cm}{!}{\normalfont\thesection.}}}\hskip 9pt}
	% new stuff
	\@ifundefined{c@totalsections@\numbertotext{\thechapter}}%
	{% if the total number of sections for this chapter is undefined
		\llap{\vbox to 5pt{\hbox{\resizebox{1cm}{!}{\normalfont\thesection.}}}\hskip 9pt}
	}%
	{% if the total number of sections for this chapter is DEFINED
		%Defined \thechapter: total sections: \thetotalsections@one 
		\llap{\vbox to 0pt{\vss\hbox{%
			\begin{tikzpicture}[
					scale=0.8,
					every node/.style={draw,
						petal,
						double,
						minimum width=0.5cm,
						shape border rotate=-(\i-1)*360/\mymax,
				}]
				\def\mymax{\the\value{totalsections@\numbertotext{\thechapter}}}
                % define the radius dependent on the total petals
                \ifnum\mymax=6
                \def\myradius{1.0cm}
                \else
                \def\myradius{0.9cm}
                \fi
				\foreach \i in {1,2,...,\mymax}
				{
					\pgfmathparse{90-(\i-1)*360/\mymax}
					\ifnum\i=\the\value{section}
					\node[fill=red!70] at (\pgfmathresult:\myradius)  {\bfseries\@Alph{\i}};
					\else
                    \node[draw=gray!50,fill=gray!50] at (\pgfmathresult:\myradius)  {\hypersetup{linkcolor=gray}\hyperlink{section:petal:\thechapter:\@Alph{\i}}{\@Alph{\i}}};
					\fi
				}
			\end{tikzpicture}%
			\hskip 9pt
			}%
			\vss%
			}%
		}%
	}%
}
{0pt}
{}

% custom paragraph heading
\titleformat{\paragraph}[leftmargin]
{\normalfont
	\scshape\filleft}
{}
{0pt}
{}

% spacing around headings
% From the titlesec package
% \titlespacing{command}{left spacing}{before spacing}{after spacing}[right]
% spacing: how to read {12pt plus 4pt minus 2pt}
%           12pt is what we would like the spacing to be
%           plus 4pt means that TeX can stretch it by at most 4pt
%           minus 2pt means that TeX can shrink it by at most 2pt
%       This is one example of the concept of, 'glue', in TeX
\titlespacing{\chapter}{0pt}{0pt}{0.1cm}
\titlespacing\section{0pt}{12pt plus 4pt minus 2pt}{-6pt plus 2pt minus 2pt}
\titlespacing\subsection{0pt}{12pt plus 4pt minus 2pt}{-6pt plus 2pt minus 2pt}
\titlespacing\subsubsection{0pt}{-3pt plus 4pt minus 2pt}{-6pt plus 2pt minus 2pt}
\titlespacing{\paragraph}{4pc}{1.5ex plus .1ex minus .2ex}{1pc}

% secnumdepth dictates which headings get enumerated- setting it 
% to 1 means that chapters and sections get enumerated, but 
% no headings below them will (such as subsection, subsubsection, paragraph, etc)
\setcounter{secnumdepth}{1}

% toc settings
% toc settings
% toc settings
%
% \titlecontents{<heading>}
%   [] % left margin
%   {} % before code
%   {} % formatting for numbered entries of this type
%   {} % formatting for UNnumbered entries of this type
%   {} % filler page format
\titlecontents{chapter}%
[0pc]       % left margin
{\vspace{.5cm}}
{%          % numbered format
	\llap{\vbox to 10pt{%
		\hbox{%
			%    \resizebox{1cm}{!}{\color{gray}\thecontentslabel}\hskip 0.5cm
			\begin{tcolorbox}[pccstyle,width=1.8cm]
				\resizebox{1cm}{!}{\color{gray}\thecontentslabel}\hskip 1.5cm
			\end{tcolorbox}
		}%
		}%
		}\color{blue!40}\large\sc\bfseries%
}
{\large\sc}          % unnumbered format
{\titlerule*[.5pc]{.}\large\sc Page \bfseries\contentspage}%

% indented subsection (in toc)
\titlecontents{subsection}
[2.0cm]             % left margin
{}                  % above code
{%                  % numbered format
	{\thecontentslabel\hskip .5cm}%
}%
{}         % unnumbered format
{\titlerule*[.5pc]{.}\contentspage}%

% headers and footers
\fancyhf{} % delete current header and footer
\fancyhead[LE,RO]{\bfseries\thepage}
\fancyhead[LO,RE]{\leftmark}
\fancyheadoffset[LE,LO]{3cm}
\pagestyle{fancy}

% remove the word Chapter from the header
\def\chaptermark#1{\markboth{\textsc{\thechapter. \  #1}}{}}

%%%%% make refcheck and cleveref play nicely together (not needed once the document is complete): 
%%% http://tex.stackexchange.com/questions/87610/making-refcheck-work-with-cleveref
%%\makeatletter
%%\newcommand{\refcheckize}[1]{%
	%%\expandafter\let\csname @@\string#1\endcsname#1%
	%%\expandafter\DeclareRobustCommand\csname relax\string#1\endcsname[1]{%
		%%\csname @@\string#1\endcsname{##1}\wrtusdrf{##1}}%
	%%\expandafter\let\expandafter#1\csname relax\string#1\endcsname
%%}
%%% Now we add the reference commands we want refcheck to be aware of
%%\refcheckize{\vref}
%%\refcheckize{\cref}
%%\refcheckize{\Cref}
%%\refcheckize{\cpageref}
%%%%%

% wide page for side by side figures, tables, etc
\newlength{\offsetpage}
\setlength{\offsetpage}{3.0cm}
\newenvironment{widepage}{\begin{adjustwidth}{-\offsetpage}{}%{-.5\offsetpage}%
	\addtolength{\textwidth}{2\offsetpage}}%
{\end{adjustwidth}}

% renew the quote environment to make it italic
\let\oldquote\quote
\let\oldendquote\endquote
\renewenvironment{quote}{\oldquote \itshape}{\oldendquote}

% for quotations with an attributed source
\def\signed #1{{\leavevmode\unskip\nobreak\hfil\penalty50\hskip2em
	\hbox{}\nobreak\hfil#1%
	\parfillskip=0pt \finalhyphendemerits=0 \endgraf}}

\newsavebox\mybox
\newenvironment{aquote}[1]
{\savebox\mybox{#1}\begin{quote}}
{\signed{\usebox\mybox}\end{quote}}

% recommendations
% recommendations
% recommendations

% this creates a 'dummy' heading level after paragraph, which we can exploit
% to read in the recommendations from the toc
\titleclass{\pcctitle}{straight}[\paragraph]
\titleformat{\pcctitle}{}{}{}{}
\titlecontents{pcctitle}
[3.8cm]             % left margin
{}                  % above code
{% numbered format
\raisebox{0pt}[0pt][0pt]{\llap{\begin{minipage}[t]{6cm}
\bfseries\raggedleft\thecontentslabel\end{minipage}~~}}%
}%                  
{\scshape\hypersetup{linkcolor=black}}         % unnumbered format
{\titlerule*[.5pc]{.}\contentspage}%

% need to set the toclevel here, otherwise the recommendations appear in bookmarks
% http://tex.stackexchange.com/questions/123575/how-to-suppress-the-author-bookmark-generated-by-svmult-with-bookmark-package-wi
\makeatletter
\providecommand*{\toclevel@pcctitle}{7} 

% command to output recommendation on the page, and also add it
% to the list of recommendations
\newcommand{\recommendation}[2][]{%
\raisebox{0pt}[0pt][0pt]{\llap{%
\tikz[baseline=(X.base)] \node[star,fill=yellow,draw=orange,scale=0.65] (X){R};\hskip .5cm%
}}%
\phantomsection
#2%
\ifx\\#1\\% if the first argument is empty then use the second (default)
\addcontentsline{toc}{pcctitle}{#2}%
      \else % if we want to put something else in the list of recommendations
     \addcontentsline{toc}{pcctitle}{\protect\numberline{\protect#1} #2}%
      \fi%
      }

%\includeonly{Overview}
%\includeonly{OutcomesAndAssessment,appendices/coreOutcomesMapping}
%\includeonly{OtherCurricularIssues}
%\includeonly{NeedsOfStudentsAndCommunity}
%\includeonly{FacultyReflection}
%\includeonly{FacilitiesAndSupport}
%\includeonly{appendices/dlSuccessfulCompletion}
%\includeonly{Recommendations}
%\includeonly{colophon}
%\includeonly{appendices/enrollmentSummaries}
%\includeonly{appendices/tutoringHours}
%\includeonly{colophon}
%\includeonly{appendices/pathways}
%\includeonly{appendices/professionalDevelopment}

% special characters in url in footnote: http://tex.stackexchange.com/questions/12230/getting-percent-sign-into-an-url-in-a-footnote
\urldef\awardsurl\url{http://www.pcc.edu/resources/academic/learning-assessment/sac-resources.html#assessmentwin}

\begin{document}

% add a bookmark for the toc
\pdfbookmark{Title page}{Title Page}

% title page
\includepdf{graphics/titlePage}

% add a bookmark for the toc
\pdfbookmark{\contentsname}{Contents}

% this bit puts a tcolorbox around the toc
\begin{tcolorbox}[tocstyle,
                  title={Contents},
                  %watermark text={\bfseries\Large Contents},
                  %watermark color=yellow!75!red!25!white,
                  ]
            \makeatletter
            \@starttoc{toc}
            \makeatother
          \end{tcolorbox}

\glsaddall
\printglossary

% needed for the recommendation toc
\startcontents

%= == == == == == == == == == == =
% main chapters
%= == == == == == == == == == == =
\renewcommand{\thesection}{\Alph{section}}
\include{Overview}
\include{OutcomesAndAssessment}
\include{OtherCurricularIssues}
\include{NeedsOfStudentsAndCommunity}
\include{FacultyReflection}
\include{FacilitiesAndSupport}
% I don't like doing this, but there is no chapter 7
\makeatletter
	\immediate\write\@auxout{%
		\string\cmh\string{\thechapter\string}\string{\the\value{section}\string}
	}
\makeatother
\refstepcounter{chapter} 
\include{Recommendations}

%= == == == == == == == == == == =
% bibliography
% bibliography
% bibliography
%= == == == == == == == == == == =
\setcounter{biburllcpenalty}{100}
\printbibliography[heading=bibintoc]

%= == == == == == == == == == == =
% appendices
% appendices
% appendices
%= == == == == == == == == == == =
\appendix
% add the word Appendix to the header
\def\chaptermark#1{\markboth{\textsc{Appendix \thechapter. \  #1}}{}}
% custom section
\titleformat{\section}
{\Large\bfseries}
{\llap{\thesection\hskip.5cm}}
{0pt}
{}
\titlespacing\section{0pt}{12pt plus 4pt minus 2pt}{-5pt plus 2pt minus 2pt}

% need to change the chapter formatting for the appendices
\titlecontents{chapter}
[0pc]             % left margin
{\vskip.25cm}    % above code
{%                  % numbered format
	{\hskip.5cm\color{black}\large\thecontentslabel\hskip .2cm}\large\sc%
}%
{\large\sc}         % unnumbered format
{\titlerule*[.5pc]{.}\large\sc\bfseries \contentspage}%

% need to change the section formatting for the appendices
\titlecontents{section}
[1cm]               % left margin
{}                  % above code
{%                  % numbered format
	{\thecontentslabel\hskip .5cm}%
}%
{}         % unnumbered format
{\titlerule*[.5pc]{.}\contentspage}%

\titlecontents{subsection}
[1.7cm]               % left margin
{}                  % above code
{%                  % numbered format
	{\thecontentslabel\hskip .5cm}%
}%
{}         % unnumbered format
{\titlerule*[.5pc]{.}\contentspage}%

\renewcommand{\thesection}{\arabic{section}}
% start a partial tableofcontents for the appendix
\clearpage
\thispagestyle{plain}
\phantomsection
\addcontentsline{toc}{chapter}{Appendices}
\startcontents[appendixtoc]
\begin{tcolorbox}[tocstyle,title={Appendices}]
\printcontents[appendixtoc]{}{0}{}
\end{tcolorbox}
\include{appendices/pathways}
\include{appendices/changeinALCcourses}
\include{appendices/socialJustice}
\include{appendices/coreOutcomesMapping}
\include{appendices/dlSuccessfulCompletion}
\include{appendices/demographicData}
\include{appendices/onlineHwStudy}
\include{appendices/ALEKSpilot}
\include{appendices/ampData}
\include{appendices/effectivenessALC}
\include{appendices/enrollmentSummaries}
\include{appendices/classSize}
\include{appendices/accessibilitysummary}
\include{appendices/sectionsTaughtPTFT}
\include{appendices/facultyDegrees}
\include{appendices/instructorQualifications}
\include{appendices/memberships}
\include{appendices/professionalDevelopment}
\include{appendices/resourcesurvey}
\include{appendices/tutoringHours}
\include{appendices/courseScheduling}

%= == == == == == == == == == == =
% colophon
% colophon
% colophon
%= == == == == == == == == == == =
\pdfbookmark{Colophon}{Colophon}
\include{colophon}

\end{document}