From f586e63f0bf92c21744bbc4a1690c3b298c8797f Mon Sep 17 00:00:00 2001 From: Magnus Wahlberg Date: Wed, 9 Aug 2023 16:06:03 +0200 Subject: [PATCH 1/2] Update README.md --- README.md | 4 +++- 1 file changed, 3 insertions(+), 1 deletion(-) diff --git a/README.md b/README.md index 7a131954..b007706c 100644 --- a/README.md +++ b/README.md @@ -10,7 +10,9 @@ Rare variant association testing using deep learning and data-driven burden scor git clone git@github.com:PMBio/deeprvat.git ``` 1. Change directory to the repository: `cd deeprvat` -1. Install the conda environment. We recommend using `mamba`, though you may also replace `mamba` with `conda`: +1. Install the conda environment. We recommend using `mamba`, though you may also replace `mamba` with `conda` + + *note: [the current deeprvat env does not support cuda when installed with conda](https://github.com/PMBio/deeprvat/issues/16), install using mamba for cuda support.* ``` mamba env create -n deeprvat -f deeprvat_env.yaml ``` From 625dc10736a1c784cdde3f04698921b0e2ef2ea3 Mon Sep 17 00:00:00 2001 From: Magnus Wahlberg Date: Wed, 9 Aug 2023 16:10:12 +0200 Subject: [PATCH 2/2] Update README.md Add link to mamba --- README.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/README.md b/README.md index b007706c..b0b62f11 100644 --- a/README.md +++ b/README.md @@ -10,7 +10,7 @@ Rare variant association testing using deep learning and data-driven burden scor git clone git@github.com:PMBio/deeprvat.git ``` 1. Change directory to the repository: `cd deeprvat` -1. Install the conda environment. We recommend using `mamba`, though you may also replace `mamba` with `conda` +1. Install the conda environment. We recommend using [mamba](https://mamba.readthedocs.io/en/latest/index.html), though you may also replace `mamba` with `conda` *note: [the current deeprvat env does not support cuda when installed with conda](https://github.com/PMBio/deeprvat/issues/16), install using mamba for cuda support.* ```