From 2f536c0380039b14f58eafc6d0deddad610d3e91 Mon Sep 17 00:00:00 2001 From: Joe Brown Date: Thu, 28 Jun 2018 14:05:43 -0700 Subject: [PATCH] adds images --- README.md | 8 ++++++++ 1 file changed, 8 insertions(+) diff --git a/README.md b/README.md index f79da84..6709549 100644 --- a/README.md +++ b/README.md @@ -79,6 +79,11 @@ contaminant_references: Hits to contaminant references are detailed in `quality_control/_03_.fasta.gz`. +Counts for each stage and initial sequence quality are summarized in the HTML report: + +![logo](resources/summary_table.png) + +![logo](resources/summary_quality.png) # Taxonomic Annotation @@ -106,6 +111,9 @@ Expected files after building the database are: + nodes.dmp + kaiju_db.fmi +To get a quick overview of the Kaiju assignments, `perseq` compiles absolute and relative abundance plots in the report: + +![logo](resources/summary_taxonomy.png) # Functional Annotation