diff --git a/README.md b/README.md index 579fe8c..8940b4a 100644 --- a/README.md +++ b/README.md @@ -32,7 +32,7 @@ Install with setup.py: $ git clone https://github.com/PRIDE-Archive/pridepy $ cd pridepy $ python setup.py sdist bdist_wheel -$ pip install dist/pridepy-0.0.3.tar.gz +$ pip install dist/pridepy-{version}.tar.gz ``` # Examples @@ -55,7 +55,7 @@ Download single file by name: $ pridepy download-file-by-name -a PXD022105 -o /Users/yourname/Downloads/foldername/ -f checksum.txt -p globus ``` ->**NOTE**: Currently we use globus urls ( when -p globus is used) via https not globus protocol. +>**NOTE**: Currently we use Globus URLs (when `-p globus` is used) via HTTPS, not the Globus protocol. For more information about Globus, see [Globus documentation](https://www.globus.org/data-transfer). Search projects with keywords and filters diff --git a/pridepy/files/files.py b/pridepy/files/files.py index 542d66b..fbf76f2 100644 --- a/pridepy/files/files.py +++ b/pridepy/files/files.py @@ -52,7 +52,7 @@ class Files: API_BASE_URL = "https://www.ebi.ac.uk/pride/ws/archive/v2" API_PRIVATE_URL = "https://www.ebi.ac.uk/pride/private/ws/archive/v2" - PRIDE_ARCHIVE_FTP = "ftp://ftp.pride.ebi.ac.uk" + PRIDE_ARCHIVE_FTP = "ftp.pride.ebi.ac.uk" S3_URL = "https://hh.fire.sdo.ebi.ac.uk" S3_BUCKET = "pride-public" logging.basicConfig(