From a7bed07a7779498573a20e37117962ec601337c7 Mon Sep 17 00:00:00 2001 From: Yasset Perez-Riverol Date: Sat, 5 Aug 2023 19:46:49 +0100 Subject: [PATCH 1/3] Experiment types added --- src/main/resources/cv/msmethod.cv | 3 +++ 1 file changed, 3 insertions(+) diff --git a/src/main/resources/cv/msmethod.cv b/src/main/resources/cv/msmethod.cv index 3f0d6866..58260b3f 100644 --- a/src/main/resources/cv/msmethod.cv +++ b/src/main/resources/cv/msmethod.cv @@ -10,4 +10,7 @@ PRIDE PRIDE:0000452 HDMSE HDMSE (Data-independent acquisition) PRIDE PRIDE:0000453 PAcIFIC PAcIFIC (Data-independent acquisition) PRIDE PRIDE:0000454 All-ion fragmentation All-ion fragmentation (Data-independent acquisition) PRIDE PRIDE:0000512 RNA mass spectrometry RNA mass spectrometry +PRIDE PRIDE:0000635 Affinity proteomics Affinity proteomics +PRIDE PRIDE:0000636 SomaScan affinity proteomics SomaScan affinity proteomics +PRIDE PRIDE:0000637 Olink affinity proteomics Olink affinity proteomics MS MS:1002521 Mass spectrometry imaging MS imaging \ No newline at end of file From e3a62d5109fe76dff5ae0e4d1317cd48769553d1 Mon Sep 17 00:00:00 2001 From: Yasset Perez-Riverol Date: Sat, 5 Aug 2023 19:49:11 +0100 Subject: [PATCH 2/3] instruments added --- src/main/resources/cv/instrument.cv | 2 ++ 1 file changed, 2 insertions(+) diff --git a/src/main/resources/cv/instrument.cv b/src/main/resources/cv/instrument.cv index b43bbd23..d7bc6429 100644 --- a/src/main/resources/cv/instrument.cv +++ b/src/main/resources/cv/instrument.cv @@ -23,4 +23,6 @@ MS MS:1001782 Synapt MS Waters Synapt MS MS:1000189 Q-Tof Ultima Waters Q-Tof Ultima MS MS:1002416 Orbitrap Fusion Thermo Scientific Orbitrap Fusion MS MS:1002732 Orbitrap Fusion Lumos Thermo Scientific Orbitrap Fusion Lumos +PRIDE PRIDE:0000640 SomaScan assay v4.0 SomaScan assay v4.0 +PRIDE PRIDE:0000641 SomaScan assay v4.1 SomaScan assay v4.1 From a8165da94b6e84453f91bf9a12b073f002f9db13 Mon Sep 17 00:00:00 2001 From: Yasset Perez-Riverol Date: Sat, 5 Aug 2023 19:53:34 +0100 Subject: [PATCH 3/3] other changes --- src/main/resources/cv/quantification.cv | 3 +++ 1 file changed, 3 insertions(+) diff --git a/src/main/resources/cv/quantification.cv b/src/main/resources/cv/quantification.cv index cd37bd6c..0b5d158b 100644 --- a/src/main/resources/cv/quantification.cv +++ b/src/main/resources/cv/quantification.cv @@ -15,6 +15,9 @@ PRIDE PRIDE:0000439 Spectral Abundance Factor - SAF Spectral Abundance Factor - PRIDE PRIDE:0000440 Normalized Spectral Abundance Factor - NSAF Normalized Spectral Abundance Factor - NSAF PRIDE PRIDE:0000441 APEX - Absolute Protein Expression APEX - Absolute Protein Expression PRIDE PRIDE:0000513 Dimethyl Labeling Dimethyl Labeling (DML) +PRIDE PRIDE:0000636 SomaScan affinity proteomics SomaScan affinity proteomics +PRIDE PRIDE:0000637 Olink affinity proteomics Olink affinity proteomics +