diff --git a/DESCRIPTION b/DESCRIPTION index 7690dc8..f0601f5 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -1,7 +1,7 @@ Package: vite Type: Package Title: Analyzing single-cell data using graphs -Version: 0.4.6 +Version: 0.4.7 Authors@R: "Pier Federico Gherardini [aut, cre]" Description: This is a package for visualization and analysis of high-dimensional single-cell data using graphs diff --git a/R/scaffold.R b/R/scaffold.R index 1a55dc0..9a17f5b 100644 --- a/R/scaffold.R +++ b/R/scaffold.R @@ -47,7 +47,7 @@ load_landmarks <- function(files.list, asinh.cofactor, transform.data, ...) { population <- tail(strsplit(basename(f), "_")[[1]], n = 1) population <- gsub(".fcs", "", population) fcs <- flowCore::read.FCS(f, ...) - tab <- grappolo::convert_fcs(fcs, asinh.cofactor, transform.data, clip.at.zero = T) + tab <- grappolo::convert_fcs(fcs, asinh.cofactor, transform.data, negative.values = "truncate") tab <- data.frame(tab, cellType = population, stringsAsFactors = F, check.names = F) res <- rbind(res, tab)