-
Notifications
You must be signed in to change notification settings - Fork 3
/
setup.cfg
125 lines (110 loc) · 2.85 KB
/
setup.cfg
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
##########################
# Setup.py Configuration #
##########################
[metadata]
name = pathme_viewer
version = 0.0.11-dev
description = A plugin for PathMe that allows to explore overlaps across pathway databases
long_description = file: README.rst
# URLs associated with the project
url = https://github.com/PathwayMerger/PathMe-Viewer
download_url = https://pypi.org/project/pathme-viewer/
project_urls =
Bug Tracker = https://github.com/PathwayMerger/PathMe-Viewer/issues
Source Code = https://github.com/PathwayMerger/PathMe-Viewer
Documentation = https://pathme-viewer.readthedocs.io/en/latest/
# Author information
author = Daniel Domingo-Fernández
author_email = [email protected]
maintainer = Daniel Domingo-Fernández
maintainer_email = [email protected]
# License Information
license = Apache 2.0 License
license_file = LICENSE
# Search tags
classifiers =
Development Status :: 4 - Beta
Environment :: Console
Intended Audience :: Developers
Intended Audience :: Science/Research
License :: OSI Approved :: Apache Software License
Operating System :: OS Independent
Programming Language :: Python
Programming Language :: Python :: 3.7
Programming Language :: Python :: 3.6
Programming Language :: Python :: 3 :: Only
Topic :: Scientific/Engineering :: Bio-Informatics
keywords =
Pathway Databases
Systems Biology
Networks Biology
Biological Expression Language
[options]
install_requires =
click==7.0
flask_wtf==0.14.2
flask==1.0.2
flask-bootstrap==3.3.7.1
flask_admin==1.5.3
flask_security==3.0.0
flask_sqlalchemy==2.3.2
sqlalchemy==1.3.3
pandas==0.24.2
tqdm==4.31.1
numpy==1.16.3
tqdm==4.31.1
compath_utils==0.2.1
compath==0.1.2
rdflib==4.2.2
rdflib-jsonld==0.4.0
requests==2.21.0
bio2bel==0.2.1
bio2bel_hgnc==0.2.2
bio2bel_chebi==0.2.1
bio2bel_kegg==0.2.5
bio2bel_wikipathways==0.2.3
bio2bel_reactome==0.2.3
jsonschema==2.6.0
pybel==0.13.2
pybel-tools==0.7.3
pathme==0.1.9
# Random options
zip_safe = false
include_package_data = True
python_requires = >=3.6
# Where is my code
packages = find:
package_dir =
= src
[options.packages.find]
where = src
[options.extras_require]
docs =
sphinx
sphinx-rtd-theme
sphinx-click
sphinx-autodoc-typehints
web =
flask
flask_admin
[options.entry_points]
console_scripts =
pathme_viewer = pathme_viewer.cli:main
######################
# Doc8 Configuration #
# (doc8.ini) #
######################
[doc8]
max-line-length = 120
##########################
# Coverage Configuration #
# (.coveragerc) #
##########################
[coverage:run]
branch = True
source = pathme_viewer
[coverage:report]
show_missing = True
exclude_lines =
def __str__
def __repr__