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RELEASE_NOTES
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RELEASE_NOTES
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This file contains a description of the major changes to the easybuild-framework EasyBuild package.
For more detailed information, please see the git log.
These release notes can also be consulted at https://easybuild.readthedocs.io/en/latest/Release_notes.html.
v4.6.2 (October 21st 2022)
--------------------------
update/bugfix release
- various enhancements, including:
- add support for easystack file that contains easyconfig filenames + implement parsing of configuration options (#4021)
- skip over unset $EB_PYTHON/$EB_INSTALLPYTHON in eb wrappeer script (#4080)
- add GITHUB_RELEASE and GITHUB_LOWER_RELEASE templates (#4084)
- add `%(cuda_cc_cmake)s` template (#4087)
- various bug fixes, including:
- make check_sha256_checksums verify all checksums if they're specified as a dict value (#4076)
- replace use of symlink with copied files in `alt_location` tests to fix failing EasyBuild installation on BeeGFS (#4083)
- fix trying to generate RPATH wrappers for Clang (#4088)
- make sure that GitPython version is a proper version before checking minimal required version (#4090, #4091)
- first look for patch in alt_location when it is specified (#4093)
- other changes:
- make scripts executable (#4081)
- make --inject-checksums inject dictionary value for checksums which maps filename to SHA256 checksum (#4085)
- update to v3 of actions/checkout and actions/setup-python in CI workflows (#4089)
- use SYSTEM template constant in dependencies instead of True in framework tests (#4094)
v4.6.1 (September 12th 2022)
----------------------------
update/bugfix release
- various enhancements, including:
- add script to find dependencies of Python packages (#3839)
- add 'ai' default module class (#4053)
- various bug fixes, including:
- fix code style issues reported by recent flake8 linter (#4049)
- stick to autopep8 < 1.7.0 with Python 2.7 (#4055)
- ensure we call EasyBlock.patch_step for postinstallpatches (#4063)
- fix leaked handles in set_columns, complete_cmd, run_cmd_qa, det_terminal_size functions + tests (#4066)
- fix `quote_str` when string with both ' and " ends with a double quote (#4068)
- fix type-checking of patches to allow dict values + correctly handle patches specified as dict values in --new-pr (#4070)
- relax toolchain test by accepting both -march=native (x86_64) and -mcpu=native (aarch64) (#4071)
- other changes:
- run python in the same process as `eb` wrapper script by using `exec` (#4048)
- add get_linked_libs_raw function, and use it from both check_linked_shared_libs and sanity_check_rpath (#4051)
- update CI workflows (except container tests) to use Ubuntu 20.04, since Ubuntu 18.04 is deprecated (#4064)
- use SYSTEM constant for dependency that uses system toolchain in dumped easyconfig (#4069)
v4.6.0 (July 8th 2022)
----------------------
feature release
- various enhancements, including:
- allow searching for sources/patches in alternative location by specifying 'alt_location' in source/patch spec (#3994)
- show URLs used for download attempts in trace output (#4026)
- add support for setting environment variables via 'pushenv' with modextravars (#4030)
- add support for OneAPI compilers using toolchain option 'oneapi' (#4031, #4032, #4039)
- make check_linked_shared_libs more robust by taking into account that 'ldd' may fail (#4033)
- fall back to sequential extension install if parallel install is not implemented (#4034)
- add support for using template values in name/version of extensions (#4036)
- various bug fixes, including:
- make sure that ARCH constant has 'aarch64' (rather than 'arm64') as value on macOS ARM (#4018)
- tweak 'eb' wrapper script to correctly handle errors when python command being considered fails to run (#4019)
- tweak is_patch_for function to make it more robust (#4028)
- other changes:
- update Lmod used to run tests to version 8.7.6 (#4027, #4030)
- tweak apply_patch to not create .orig files (by default) when applying patch files (#4038)
v4.5.5 (June 8th 2022)
----------------------
update/bugfix release
- various enhancements, including:
- add toolchain definitions for nvompi (NVHPC + OpenMPI) (#3969), nvpsmpi (NVHPC + ParaStationMPI) (#3970), gfbf (GCC, FlexiBLAS, FFTW) (#4006)
- add support for FFTW.MPI toolchain component ($FFT*DIR variables) (#4012)
- add support for customizing EasyBuild command used in jobs via --job-eb-cmd (#4016)
- various bug fixes, including:
- fix copying of easyconfig file with --copy-ec without --rebuild if module is already installed (#3993)
- ignore deprecation warnings regarding cryptography in Python 3.6 + Blowfish with Python 3.10 in test suite output (#3999)
- fix typo in debug log message in easyblock.py (#4000)
- fix printing of list of attempted download URLs when url-encoded characters are used in URL (#4005)
- set $FFT(W)_LIB_DIR to imkl-FFTW's lib path in build environment if usempi toolchain option is enabled (#4011)
- correctly identify Apple Silicon M1 as Arm 64-bit by also considering arm64 next to aarch64 (#4014)
- fix 'eb --show-system-info' on Apple M1 system (#4015)
- other changes:
- change 'eb' command to import easybuild.framework to check if EasyBuild framework is available (#3995, #3998)
v4.5.4 (March 31st 2022)
------------------------
update/bugfix release
- various enhancements, including:
- warn about potentially missing patches in --new-pr (#3759, #3966)
- add support for 'clone_into' field in git_config source spec to specify different name for top-level directory (#3949)
- add bash completion for easyconfigs from local dir but not robot search path (#3953)
- add a 'sync pr' message when the PR has a mergeable state but is showing a failed status for the test suite on the last commit (#3967)
- add gmpit toolchain definition (GCC + MPItrampoline) (#3971)
- use 'zypper search -i' to check whether specified OS dependency is installed on openSUSE + make sure that rpm is considered for checking OS dependencies on RHEL8 (#3973)
- add support for post-install patches (#3974)
- add support for 'download_instructions' easyconfig parameter key to specify some download or installation steps for user in case of complicated way of obtaining needed files (#3976, #3981)
- also try collecting AMD GPU info (via rocm-smi) for --show-system-info (#3978, #3982)
- various bug fixes, including:
- ensure --review-pr can find dependencies included in PR (#3979)
- run 'apt-get update' in GitHub Actions workflow for container tests to update container package list before installing anything (#3985)
- other changes:
- enable code linting check for all supported Python versions (#3725)
- update copyright lines for 2022 (#3986)
v4.5.3 (February 11th 2022)
---------------------------
update/bugfix release
- various enhancements, including:
- also check for git in --check-eb-deps (#3954)
- add end2end test for 'eb --containerize' (#3958)
- various bug fixes, including:
- take into account that patch files can also be zipped when checking filename extension for patches (#3936)
- initialize BACKUP_PKG_URL with empty string in install_eb_dep.sh script (#3939)
- fix get_os_name and get_os_version to avoid reporting UNKNOWN in output of eb --show-system-info (#3942)
- consistently use actions/setup-python@v2 in CI workflows (#3944)
- switch to using pip3 for installing EasyBuild in container recipes generated by EasyBuild (#3945)
- specify easybuild.io as EasyBuild homepage in setup.py (#3947)
- avoid crash in get_os_version on modern SLES-based OSs (#3955)
- other changes:
- indicate compatibility with Python 3.10 in setup.py (#3940)
v4.5.2 (January 24th 2022)
--------------------------
update/bugfix release
- various enhancements, including:
- automatically prepend value for env-for-shebang configuration setting with sysroot (#3919)
- enhance update_build_option to return original value + add support for update_build_options (#3923)
- fix compatibility with Python 3.10 (#3926, #3933)
- also take /etc/os-release into account in get_os_name and get_os_version (#3930)
- enhance get_cpu_architecture and get_cpu_family to be aware of RISC-V (#3931)
- various bug fixes, including:
- relax pattern checks in test_toy_exts_parallel (#3921)
- use sources.easybuild.io as backup URL for downloading Environment Modules sources to run test suite (#3928)
- make intelfftw toolchain component aware of GCCcore (#3929)
- other changes:
- deprecate use of (actual) patch files that don't have a filename ending with .patch (#3920)
- remove version restriction for keyring in requirements.txt to test with latest version (#3925)
- simplify requirements.txt by removing Python 2.6 support (#3927)
- only run GitHub tests when testing with Lua module syntax, to avoid hitting GitHub rate limit when running tests (#3938)
v4.5.1 (December 13th 2021)
---------------------------
update/bugfix release
- various enhancements, including:
- also dump environment to reprod directory (#3374)
- determine which extensions can be skipped in parallel (if --parallel-extensions-install is enabled) (#3890)
- fall back to sequential installation for extensions with unknown dependencies when using --parallel-extensions-install (#3906)
- allow oversubscription in sanity check for OpenMPI-based toolchains (#3909)
- various bug fixes, including:
- don't try to ensure absolute path for path part of repositorypath (#3893, #3899)
- fix typo in EULA agreement error message (#3894)
- only remove lock if it was created in the same EasyBuild session (not if it existed already) (#3889)
- introduce EasyBlock.post_init method to correctly define builddir variable when build-in-installdir mode is enabled in easyconfig or easyblock (#3900)
- also show download progress bar when using --inject-checksums (#3905)
- pick up custom extract_cmd specified for extension (#3907)
- make test_run_cmd_async more robust against fluke failures (#3908)
v4.5.0 (October 29th 2021)
--------------------------
feature release
- various enhancements, including:
- add --review-pr-max and --review-pr-filter options to limit easyconfigs used by --review-pr + retain order of easyconfigs being compared with (#3754)
- use Rich (if available) to show progress bars when installing easyconfigs (#3823, #3826, #3833, #3835, #3844, #3864, #3867, #3882)
- see also https://docs.easybuild.io/en/latest/Progress_bars.html
- add support for checking required/optional EasyBuild dependencies via 'eb --check-eb-deps' (#3829)
- add support for collecting GPU info (via nvidia-smi), and include it in --show-system-info and test report (#3851)
- added support for --insecure-download configuration option (#3859)
- make intelfftw toolchain component aware of imkl-FFTW module (#3861)
- make sure the contrib/hooks tree is included in the source tarball for easybuild-framework (#3862)
- add check_async_cmd function to facilitate checking on asynchronously running commands (#3865, #3881)
- add initial/experimental support for installing extensions in parallel (#3667, #3878)
- see also https://docs.easybuild.io/en/latest/Installing_extensions_in_parallel.html
- filter out duplicate paths added to module files, and print warning when they occur (#3770, #3874)
- various bug fixes, including:
- ensure that path configuration options have absolute path values (#3832)
- fix broken test by taking into account changed error raised by Python 3.9.7 when copying directory via shutil.copyfile (#3840)
- ensure newer location of CUDA stubs is taken into account by RPATH filter (#3850)
- replace 'which' by 'command -v' in 'eb' wrapper script to avoid dependency on 'which' command (#3852)
- refactor EasyBlock to decouple collecting of information on extension source/patch files from downloading them (#3860)
- in this context, the EasyBlock.fetch_extension_sources method was deprecated, and replaced by EasyBlock.collect_exts_file_info
- fix library paths to add to $LDFLAGS for intel-compilers toolchain component (#3866)
- remove '--depth 1' from git clone when 'commit' specified (#3871, #3872)
- make sure correct include directory is used for FlexiBLAS toolchain component (#3875)
- explictly disable rebase when pulling develop branch to create a merge commit, since not specifying how to reconcile divergent branches is an error with Git 2.33.1 and newer (#3879)
- tweak test_http_header_fields_urlpat to download from sources.easybuild.io rather than https://ftp.gnu.org (#3883)
- other changes:
- change copy_file function to raise an error when trying to copy non-existing file (#3836, #3855, #3877)
- only print the hook messages if EasyBuild is running in debug mode (#3843)
- deprecate old toolchain versions (pre-2019a common toolchains) (#3876, #3884)
- see also https://docs.easybuild.io/en/latest/Deprecated-easyconfigs.html#deprecated-toolchains
v4.4.2 (September 7th 2021)
---------------------------
update/bugfix release
- various enhancements, including:
- add per-extension timing in output produced by eb command (#3734)
- add definition for new toolchain nvpsmpic (NVHPC + ParaStationMPI + CUDA) (#3736)
- include list of missing libraries in warning about missing FFTW libraries in imkl toolchain component (#3776)
- check for recursive symlinks by default before copying a folder (#3784)
- add --filter-ecs configuration option to filter out easyconfigs from set of easyconfigs to install (#3796)
- check type of source_tmpl value for extensions, ensure it's a string value (not a list) (#3799)
- also define $BLAS_SHARED_LIBS & co in build environment (analogous to $BLAS_STATIC_LIBS) (#3800)
- report use of --ignore-test-failure in success message in output (#3806)
- add get_cuda_cc_template_value method to EasyConfig class (#3807)
- add support for fix_bash_shebang_for (#3808)
- pick up $MODULES_CMD to facilitate using Environment Modules 4.x as modules tool (#3816)
- use more sensible branch name for creating easyblocks PR with --new-pr (#3817)
- various bug fixes, including:
- remove Python 2.6 from list of supported Python versions in setup.py (#3767)
- don't add directory that doesn't include any files to $PATH or $LD_LIBRARY_PATH (#3769)
- make logdir writable also when --stop/--fetch is used and --read-only-installdir is enabled (#3771)
- fix forgotten renaming of 'l' to 'char' __init__.py that is created for included Python modules (#3773)
- fix verify_imports by deleting all imported modules before re-importing them one by one (#3780)
- fix ignore_test_failure not set for Extension instances (#3782)
- update iompi toolchain to intel-compiler subtoolchain for oneAPI versions (>= iompi 2020.12) (#3785)
- don't parse patch files as easyconfigs when searching for where patch file is used (#3786)
- make sure git clone with a tag argument actually downloads a tag (#3795)
- fix CI by excluding GC3Pie 2.6.7 (which is broken with Python 2) and improve error reporting for option parsing (#3798)
- correctly resolve templates for patches in extensions when uploading to GitHub (#3805)
- add --easystack to ignored options when submitting job (#3813)
- other changes:
- speed up tests by caching checked paths in set_tmpdir + less test cases for test_compiler_dependent_optarch (#3802)
- speed up set_parallel method in EasyBlock class (#3812)
v4.4.1 (July 6th 2021)
----------------------
update/bugfix release
- various enhancements, including:
- enhance detection of patch files supplied to 'eb' command with better error messages (#3709)
- add per-step timing information (#3716)
- add module-write hook (#3728)
- add ignore-test-failure configuration option to ignore failing test step (#3732)
- add toolchain definition for nvompic (NVHPC + OpenMPI) (#3735)
- warn about generic milestone in --review-pr and --merge-pr (#3751)
- various bug fixes, including:
- don't override COMPILER_MODULE_NAME, inherited from Ffmpi, in Fujitsu toolchain definition (#3721)
- avoid overwritting pr_nr in post_pr_test_report for reports with --include-easyblocks-from-pr (#3724, #3726)
- fix crash in get_config_dict when copying modules that were imported in easyconfig file (like 'import os') (#3729)
- parse C standard flags in CFLAGS for Fujitsu compiler (#3731)
- fix error message for --use-ccache (#3733)
- error out when passing a list to run_cmd* to avoid running wrong command unintended, unless shell=True is used (#3737)
- minor fixes to output of test reports when using multiple PRs (#3741)
- fix location for modules installed with intel-compilers toolchain in HierarchicalMNS by always checking toolchain compiler name against template map (#3745)
- avoid checking msg attribute of GitCommandError (#3756)
- consider sources provided as dict in EasyBlock.check_checksums_for (#3758)
- don't make changes to software installation directory when using --sanity-check-only (#3761)
- honor specified easyblock for extensions (#3762)
- other changes:
- make sure that tests requiring a github token have 'github' in the test name so that they can be easily filtered (#3730)
- deprecate EasyBuild bootstrap script (#3742)
- use temporary download folder in test_http_header_fields_urlpat (#3755)
v4.4.0 (June 2nd 2021)
----------------------
feature release
- various enhancements, including:
- enhance apply_regex_substitutions to allow specifying action to take in case there are no matches (#3440)
- performance improvements for easyconfig parsing and eb startup (#3555)
- add support for downloading easyconfigs from multiple PRs with --from-pr (#3605, #3707, #3708)
- add support for prepending custom library paths in RPATH section via --rpath-override-dirs (#3650)
- allow amending easyconfig parameters which are not the default (#3651)
- update HierarchicalMNS for Intel OneAPI compilers (#3653)
- add support for --sanity-check-only (#3655)
- add support for running commands asynchronously via run_cmd + complete_cmd functions (#3656)
- add support for using oneAPI versions of 'intel' toolchain components (#3665)
- add toolchain definition for gofbf (foss with FlexiBLAS rather than OpenBLAS) (#3666)
- add support for using ARCH constant in easyconfig files (#3670)
- honor keyboard interrupt in 'eb' command (#3674)
- add toolchain definition for Fujitsu toolchain (#3677, #3704, #3712, #3713, #3714, #3717)
- extend sanity check step to check whether specific libraries are not linked into installed binaries/libraries (#3678)
- via banned-linked-shared-libs and required-linked-shared-libs EasyBuild configuration options
- via banned_linked_shared_libs and required_linked_shared_libs methods in toolchain support
- via banned_linked_shared_libs and required_linked_shared_libs methods in easyblock
- via banned_linked_shared_libs and required_linked_shared_libs easyconfig parameters
- add locate_solib function to locate Linux shared libraries (#3682)
- add system agnostic function to locate shared libraries (#3683)
- add update_build_option function to update specific build options after initializing the EasyBuild configuration (#3684)
- allow opting out of recursively unloaded of modules via recursive_module_unload easyconfig parameter (#3689)
- check for correct version values when parsing easystack file (#3693)
- run post-install commands specified for a specific extension (#3696)
- add support for --skip-extensions (#3702)
- include PR title in output produced by --merge-pr (#3706)
- various bug fixes, including:
- avoid metadata greedy behaviour when probing for external module metadata (mostly relevant for integration with Cray Programming Environment) (#3559)
- catch problems early on if --github-user is not specified for --new-pr & co (#3644)
- re-enable write permissions when installing with read-only-installdir (#3649)
- also run sanity check for extensions when using --module-only (#3655)
- improve logging when failing to load class from exts_classmap (#3657)
- fix use of --module-only on existing installations without write permissions (#3659)
- correct help text for subdir-user-modules (#3660)
- avoid picking up easyblocks outside of sandbox in framework tests (#3680)
- use unload/load in ModuleGeneratorLua.swap_module, since 'swap' is not supported by Lmod (#3685)
- update HierarchicalMNS to also return 'Toolchain/<name>/<version>' as $MODULEPATH extension for cpe* Cray toolchains (#3686)
- make EasyConfigParser.get_config_dict return a copy rather than a reference (#3692)
- make sure that $TAPE is unset when using piped tar (#3698)
- fix extending message for changed files in new_pr_from_branch (#3699)
- enhance sched_getaffinity function to avoid early crash when counting available cores on systems with more than 1024 cores (#3701)
- correctly strip extension from filename in extract_cmd and back_up_file functions (#3705)
- other changes:
- deprecate adding a non-existing path to $MODULEPATH (#3637)
- bump cryptography requirement from 3.2.1 to 3.3.2 (#3643, #3648)
- test bootstrap script in separate workflow, and limit test configurations a bit (#3646)
- update setup.py to indicate compatibility with Python 3.8 and 3.9 (#3647)
- replace log_error parameter of which() by on_error (#3661, #3664)
- don't skip sanity check for --module-only --rebuild (#3645)
- move disable_templating function into the EasyConfig class (#3668)
- pin GitPython version for Python<3.6, don't test bootstrap script against Python 3.8/3.9 (#3675)
- tweak foss toolchain definition to switch from OpenBLAS to FlexiBLAS in foss/2021a (#3679)
- suggest missing SSH key when not able to read from remote repository in --check-github (#3681)
- drop support for Python 2.6 (#3715)
v4.3.4 (April 9th 2021)
-----------------------
update/bugfix release
- various enhancements, including:
- add support for filtering dependencies by using False as version (#3506)
- add create_unused_dir function to create a directory which does not yet exist (#3551)
- avoid running expensive 'module use' and 'module unuse' commands when using Lmod as modules tool, update $MODULEPATH directly instead (#3557, #3633)
- create CUDA cache (for JIT compiled PTX code) in build dir instead of $HOME (#3569)
- add "Citing" section to module files (#3596)
- add support for using fallback 'arch=*' key in dependency version specified as arch->version mapping (#3600)
- also check for pending change requests and mergeable_state in check_pr_eligible_to_merge (#3604)
- ignore undismissed 'changes requested' review if there is an 'approved' review by the same user (#3607, #3608)
- sort output of 'eb --search' in natural order (respecting numbers) (#3609)
- enhance 'eb' command to ensure that easybuild.main can be imported before settling on python* command to use (#3610)
- add --env-for-shebang configuration option to define the env command to use for shebangs (#3613)
- add templates for architecture independent Python wheels (#3618)
- mention easyblocks PR in gist when uploading test report for it + fix clean_gists.py script (#3622)
- also accept regular expression value for --accept-eula-for (#3630)
- update validate_github_token function to accept GitHub token in new format (#3632)
- various bug fixes, including:
- fix $BLAS_LIB_MT for OpenBLAS, ensure -lpthread is included (#3584)
- use '--opt=val' for passing settings from config file to option parser to avoid error for values starting with '-' or '--' (#3594)
- avoid raised exception when getting output from interactive command in run_cmd_qa (#3599)
- add option to write file from file-like object and use in download_file (#3614)
- make sure that path to eb is always found by tests (#3617)
- other changes:
- add pick_default_branch function to clean up duplicate code in tools/github.py (#3592)
- refactor the CI configuration to use inclusion instead of exclusion (#3616)
- use develop branch when testing push access in --check-github (#3629)
- deprecate --accept-eula, rename to --accept-eula-for (#3630)
v4.3.3 (February 23rd 2021)
---------------------------
update/bugfix release
- various enhancements, including:
- advise PR labels in --review-pr and add support for --add-pr-labels (#3177)
- add support for using customized HTTP headers in download_file (#3472, #3583)
- also take toolchain dependencies into account when defining template values (#3541, #3560)
- add support for --accept-eula configuration option + 'accept_eula' easyconfig parameter (#3535, #3536, #3546)
- detect 'SYSTEM' toolchain as special case in easystack files (#3543)
- enhance extract_cmd function to use 'cp -a' for shell scripts (.sh) (#3545)
- allow use of alternate envvar(s) to $HOME for user modules (#3558)
- use https://sources.easybuild.io as fallback source URL (#3572, #3576)
- add toolchain definition for iibff toolchain (#3574)
- add %(cuda_cc_space_sep)s and %(cuda_cc_semicolon_sep)s templates (#3578)
- add support for intel-compiler toolchain (>= 2021.x versions, oneAPI) (#3581, #3582)
- various bug fixes, including:
- add --init and --recursive options to 'git submodule update' command that is used when creating source tarball for specific commit (#3537)
- filter out duplicate paths in RPATH wrapper script (#3538)
- don't clean up imported modules after verifying imports of included Python modules (#3544)
- avoid no-op changes to $LD_* environment variables in ModulesTool (#3553)
- fix UTF-8 encoding errors when running EasyBuild with Python 3.0.x-3.6.x (#3565)
- create lib64 symlink as a relative symlink (#3566)
- don't reuse variable name in the loop to fix adding extra compiler flags via toolchainopts (#3571)
- symlink 'lib' to 'lib64' if it doesn't exist (#3580)
- include %(mpi_cmd_prefix)s and %(cuda_*)s templates in output of --avail-easyconfig-templates (#3586)
- other changes:
- rename EasyBlock._skip_step to EasyBlock.skip_step, to make it part of the public API (#3561)
- make symlinking of posix_c.so to posix.so in test suite configuration conditional (#3570)
- use 'main' rather than 'master' branch in GitHub integration functionality (#3589)
v4.3.2 (December 10th 2020)
---------------------------
update/bugfix release
- add (experimental) support for specifying easyconfig files via an "easystack" file (#3479, #3511, #3515, #3517, #3520, #3521)
- see also https://easybuild.readthedocs.io/en/latest/Easystack-files.html
- add definition for new 'gobff' toolchain using BLIS and LibFLAME (#3505)
- various enhancements, including:
- add support for toolchain options like 'extra_cxxflags' to specify extra compiler options (#2193)
- fix combination of --copy-ec and --from-pr (#3482)
- enhance copy_files function: support single file target, error on empty input list, support verbose mode (#3483)
- cache result of fetch_files_from_pr function (mainly to speed up framework test suite) (#3484)
- add locate_files function to filetools module (#3485)
- add support for %(module_name)s template value (#3497)
- clarify input format for --cuda-compute-capabilities in 'eb --help' output (#3509)
- add support for skiping unit tests (test step) via --skip-test-step (#3524)
- various bug fixes, including:
- also ignore vsc.* imports coming from from pkg_resources/__init__.py (setuptools) in fake vsc namespace (#3491)
- don't pass username in github_api_get_request when no GitHub token is available (#3494)
- also inject -rpath options for all entries in $LIBRARY_PATH in RPATH wrappers (#3495)
- avoid TypeError being raised by list_toolchains (#3499)
- check if PR is already merged in --merge-pr (#3502)
- graciously handle wrong PR id in fetch_pr_data (#3503)
- fix regression in apply_regex_substitutions: also accept list of paths to patch (#3507)
- update installation procedure for EasyBuild in generated Singularity container recipes (#3510)
- fix GitHub Actions workflow for test suite: run outside of repo checkout + also test bootstrap script with Python 3.9 (#3518)
- bump cryptography from 2.9.2 to 3.2 for Python 2 in requirements.txt (#3519)
- fix 'eb --help=rst' when running with Python 3 (#3525)
- other changes:
- exclude test configurations with Lmod 7 and Python 3, except for Python 3.6 (#3496)
- significantly speed up parsing of easyconfig files by only extracting comments from an easyconfig file when they're actually needed (#3498)
- don't include file/ldd/readelf commands run during RPATH sanity check in --trace output (#3508)
v4.3.1 (October 29th 2020)
--------------------------
update/bugfix release
- various enhancements, including:
- further GCC toolchain fixes for aarch64 (#3433)
- take into account --include-easyblocks-from-pr when uploading test reports (#3446)
- add path to pkg-config files in sysroot to $PKG_CONFIG_PATH when --sysroot is specified (#3451)
- add support for NVHPC compiler + toolchain (based on PGI) (#3454)
- check for _VERSION and _PREFIX Cray environment variables with both software and module name (#3460)
- allow including easyblocks from multiple PRs (#3480, #3481)
- various bug fixes, including:
- avoid UnicodeDecodeError in apply_regex_substitutions when patching files that include non-UTF-8 characters (#3450)
- avoid appending lib stubs pattern to RPATH filter over and over again (#3452)
- fix missing string template on error for incorrect extension 'sources' value (#3461)
- fix compatibility with Python 3.9 by renaming fancy root logger (#3465)
- also remove empty checksums list specified in easyconfig file when using --inject-checksums (#3466)
- avoid confusing error log message when determining impi version while trying to define value for %(mpi_cmd_prefix)s template (#3474)
- unset $LD_LIBRARY_PATH when checking for OS dependencies with 'rpm' & co (#3477)
- don't change directory in download_repo function in tools.github (#3486)
- take source_urls, checksums, patches into account when extension source is specified via 'sources' (#3487)
- other changes:
- consider $EB_INSTALLPYTHON in 'eb' command to specify 'python' command to use for running EasyBuild (#3428)
- use only the sub folder name for createSubmoduleDeps script (#3464)
v4.3.0 (September 13th 2020)
----------------------------
feature release
- various enhancements, including:
- add script to create 'sources' entries for git submodules (#3369, #3436)
- add templates for CUDA compute capabilities (#3382)
- '%(cuda_compute_capabilities)s', '%(cuda_sm_comma_sep)s', '%(cuda_sm_space_sep)s'
- add EasyBuild configuration option --generate-devel-module (#3388)
- to allow disabling generating of "devel" modules via --disable-generate-devel-module
- set up a minimal build environment when using system compiler (#3399)
- by default, $CC is set to 'gcc' and $CXX is set to 'g++' when using 'system' toolchain
- minimal build environment can be customized via --minimal-build-env configuration option
- add --sysroot configuration option to specify alternative location of system root (#3419)
- this is useful when installing software in a Gentoo Prefix environment (for example)
- various bug fixes, including:
- allow including easyblocks from multiple locations, by combining --include-easyblocks and --include-easyblocks-from-pr (#3311)
- also escape backslashes in quote_py_str() (#3386)
- use one argument 'module swap' statements in Tcl modulefiles (required by Modules 4.2.3+) (#3397)
- fix copying of (non-existing) file with apply_patch (#3400)
- create symlink from lib64 to lib subdir in installation directories to avoid that GCC prefers /lib64 system directories (#3401)
- fix default value for 'lib64_fallback_sanity_check' build option (#3402)
- correctly determine commit status in --merge-pr (#3406)
- stop installing ccache wrapper for Fortran compiler (#3409)
- fix issues with applying PR patch in --from-pr (#3414)
- make RPATH wrapper script more robust by using 'python -E -s -S' to run rpath_args.py (#3422)
- don't inject -Wl,-rpath options when '-x c++-header' compiler option is used (#3424)
- fix lack of -mno-recip on aarch64 by tweaking GCC options used when 'precise' toolchain option is enabled (#3425)
- make sure self.start_dir is set in ExtensionEasyBlock (#3426, #3435)
- exclude local variables from typo check in easyconfig files (#3427)
- other changes:
- stick to cryptography 2.9.2 when using Python 2.7 to avoid broken test suite in CI (#3392)
- automatically enable --ignore-locks with --fetch (#3404)
- switch to status badge based on tests run in GitHub Actions CI in README (#3415)
- make flake8 code style checks pass (#3416, #3417)
- limit Travis to only test with Python 2.6 + Lomod 7 (#3418)
- ignore deprecation warning raised for cryptography when using Python 3.5 produced by output of test suite (#3423)
v4.2.2 (July 8th 2020)
----------------------
update/bugfix release
- various enhancements, including:
- add support for using 'sources' and 'git_config' for extensions in 'exts_list' (#3294)
- add support for software minver template (like %(pyminver)s, etc.) (#3344, #3345)
- add support for updating dictionary or tuple easyconfig parameters with self.cfg.update (#3356)
- various bug fixes, including:
- fix crash in --avail-easyconfig-constants when using --output-format=rst + ensure sorted output (#3341)
- always take into account builddependencies when generating template values, also when we're not iterating over builddependencies (#3346)
- fix running command as 'easybuild' user in generated Singularity definition file (#3347)
- allow ignoring versionsuffix in --try-update-deps (#3350, #3353)
- retain order of paths when generating prepend_path statements for module file (don't sort them alphabetically) (#3367)
- also put easyblocks used by extensions in 'reprod' directory (#3375)
- also copy template values in EasyConfig.copy method to ensure they are defined when installing extensions (#3377)
- skip lines that start with 'module-version' when determining whether a module exists in ModulesTool.exist (#3379)
v4.2.1 (May 20th 2020)
----------------------
update/bugfix release
- various enhancements, including:
- also mention CPU architecture (x86_64, POWER) in comment for test reports (#3281)
- add support for enhancing existing sanity check in easyconfigs, as opposed to overwriting paths/commands (#3288)
- clean up locks when EasyBuild session is cancelled with a signal like SIGTERM (#3291, #3321)
- add 'find_glob_pattern' function to filetools module (#3297)
- add constants for common OS dependencies (OS_PKG_IBVERBS_DEV, OS_PKG_OPENSSL_DEV, ...) (#3309, #3334)
- flesh out get_mpi_cmd_template function from Mpi.mpi_cmd_for method (#3312)
- add variable 'moddependpaths' to specify extra $MODULEPATH entry to consider for loading dependency modules (#3324)
- allow copying of tweaked easyconfigs when using --try-* with --copy-ec (#3332)
- various bug fixes, including:
- make ModulesTool.exist more robust w.r.t. module wrappers, aliases, defaults, etc. (#3216, #3337)
- clean up rst output of --list-toolchains (#3246)
- cast CPU arch name provided by archspec to a regular string (#3286)
- get pr_title and pr_descr built_options in new_pr_from_branch instead of new_pr (and commit_msg in both) (#3298)
- make pypi_source_urls more robust by using HTMLParser rather than xml.etree.ElementTree (#3303, #3329)
- fix broken test for --include-easyblocks-from-pr (#3304)
- don't use distutils.dir_util in copy_dir (#3310)
- print trace message for sanity check command before running it (#3316)
- fix problems with processing of easyconfigs using a Cray* toolchain when there are no actual external modules (#3319)
- make test_find_eb_script more robust in case $EB_SCRIPT_PATH is already set (#3320)
- fix several small problems wit --try-update-deps (experimental feature) (#3325, #3326, #3330)
- add --disable-job in 'eb' command used in jobs, to prevent infinite job cycle (#3328)
- avoid empty entries in $LD_LIBRARY_PATH and other path-like environment variables (#3333)
- other changes:
- fix code style issues in easybuild.tools + add flake8 linting test (#3282)
- introduce contextmanager for disabling templating and reduce resolving errors (#3287)
- add 'change_into_dir' named argument to 'extract_file' + print deprecation warning if it's not specified (#3292)
- improve install_eb_dep.sh script to install EasyBuild dependencies in CI environment (#3314)
v4.2.0 (April 14th 2020)
------------------------
feature release
- add support for --try-update-deps (experimental feature), to upgrade dependencies based on available easyconfigs (#2599)
- adding locking to prevent two parallel builds of the same installation directory (#3009)
- for more information, see https://easybuild.readthedocs.io/en/latest/Locks.html
- significantly speed up -D/--dry-run by avoiding useless 'module show' (#3203)
- add support for creating an index & using it when searching for easyconfigs (#3210)
- for more information, see https://easybuild.readthedocs.io/en/latest/Easyconfigs_index.html
- additional GitHub integration features:
- add support for targeting easyblocks and framework repositories in --new-pr (#1876, #3189)
- add support for --include-easyblocks-from-pr (#3206)
- for more information, https://easybuild.readthedocs.io/en/latest/Integration_with_GitHub.html
- various other enhancements, including:
- add a contrib/hooks dir with some examples of hooks used (#2777)
- also mention working directory + input passed via stdin (if any) in trace output of run_cmd (#3168)
- probe external modules for missing metadata that is not provided via extermal module metadata file (#3174)
- also update $CMAKE_PREFIX_PATH and $CMAKE_LIBRARY_PATH in generated module file (#3176)
- optionally call log.warning in print_warning (#3195)
- add an option to git_config to retain the .git directory (#3197)
- allow use of SYSTEM as --try-toolchain option (#3213)
- mention CPU arch name in comment for uploaded test report, if it's known by archspec (#3227)
- make --merge-pr take into account --pr-target-branch (#3236)
- make --check-contrib print a warning when None is used for checksums (#3244)
- update install-EasyBuild-develop.sh script and create script for 2020a merge sprint (#3245)
- add template for mpi_cmd_prefix (#3264)
- update copy_dir to include option to merge directories (#3270)
- support template name for CUDA version (#3274)
- various bug fixes, including:
- use correct module for errors_found_in_log (#3119)
- fix EasyConfig.update code to handle both strings and lists as input (#3170)
- fix removing temporary branch on --check-github (#3182)
- fix shebang even if first line doesn't start with '#!' (#3183)
- make boostrap script work with Python 3 (#3186)
- read patch files as bytestring to avoid UnicodeDecodeError for patches that include funky characters (#3191)
- fix online check in --check-github: try repeatedly and with different URLs to cater for HTTP issues (#3194)
- don't crash when GitPython is not installed when using Python 3 (#3198)
- fix os_name_map for RHEL8 (#3201)
- don't add shebang to binary files (#3208)
- use checkout@v2 in GitHub Actions to fix broken re-triggered tests (#3219)
- don't filter out None values in to_checksums, leave them in place (#3225)
- fix defining of $MPI_INC_* and $MPI_LIB_* environment variables for impi version 2019 and later (#3229)
- use correct target account/repo when creating test report & posting comment in PR (#3234)
- reorganize EasyBlock.extensions_step to ensure correct filtering of extensions (#3235)
- also support %(installdir)s and %(builddir)s templates for extensions (#3237)
- unset $GITHUB_TOKEN in Travis after installing token, to avoid failing test_from_pr_token_log (#3252)
- fix reporting when skipping extensions (#3254)
- avoid API rate limit errors on online check in --check-github (#3257)
- show easyconfig filenames for parallel build (#3258)
- make EasyConfig.dump aware of toolchain hierarchy, to avoid hardcoded subtoolchains in dependencies easyconfig parameters (#3261)
- fix use of --copy-ec with a single argument, assume copy to current working directory (#3262)
- fix posting of comment in PR with --upload-test-report (#3272)
- take into account dependencies marked as external modules when composing template values like %(pyver)s (#3273)
- other changes:
- increase timeout & use api.github.com for connectivity check in check_github (#3192)
- restore flake8 default ignores (#3193)
- enable tracking of test suite coverage using coveralls (#3204)
- make tests use easybuilders/testrepository rather than hpcugent/testrepository after it was moved (#3238)
- improve raised error in remove_dir and deprecate rmtree2 (#3228)
v4.1.2 (March 16th 2020)
------------------------
bugfix release
- fix gitdb dependency on Python 2.6 in test configuration (#3212)
- fix broken test for --review-pr by using different PR to test with (#3226)
- censor authorization part of headers before logging ReST API request (#3248)
- see also https://github.com/easybuilders/easybuild-framework/security/advisories/GHSA-2wx6-wc87-rmjm
v4.1.1 (January 16th 2020)
--------------------------
update/bugfix release
- various enhancements, including:
- add check_log_for_errors function (in easybuild.tools.run) to detect and handle multiple errors (#3118)
- implement support for 'eb --show-ec' to show contents of specified easyconfig file (#3132)
- also update $XDG_DATA_DIR (share/) and $GI_TYPELIB_PATH environment variables (lib*/girepository-*) in generated module files (#3133)
- add support for --copy-ec to copy easyconfig file to specified location (#3142)
- mention --disable-* option in --help output for boolean options enabled by default (#3151)
- add --cuda-compute-capabilities configuration option (#3161)
- various bug fixes, including:
- ignore imports from vsc namespace made from pkgutil.py (#3120)
- only actually change permissions using os.chmod in adjust_permissions if the current permissions are not correct already (#3125)
- use shutil.copyfile to just copy file contents if target path exists and is owned by someone else (#3127)
- fix or avoid warnings that commonly arise in build log (#3129)
- disable buffering in asyncprocess.Popen using bufsize=0, to fix run_cmd_qa missing output (#3130)
- update pip & install wheel package in generated Singularity container recipes (#3136)
- avoid crash in modify_env & unset unset_env_vars when using (older versions) of Python 3.5 & 3.6 by using list(...) (#3140)
- take into account that lib64 could be a symlink to lib (or vice versa) in get_software_libdir function (#3141)
- only parse docstring if it exists in gen_easyblock_doc_section_rst function (#3144)
- only add useful entries for $CPATH, $(LD_)LIBRARY_PATH and $PATH (non-empty directories) (#3145, #3152)
- fix --list-software=detailed when using Python 3 by leveraging sort_looseversions function from py2vs3 module (#3146)
- ensure subdirectories in software install directory have correct search (exec) permission (#3147)
- take into account that a checksum value may be a tuple of valid checksum in EasyBlock.check_checksums (#3153)
- other changes:
- bump to Lmod 8.2.9 in GitHub CI config (#3115)
- update copyright statements for 2020 (#3149)
- make Hound CI code style checker ignore "Black would make changes" produced by flake8-black (#3162)
v4.1.0 (December 4th 2019)
--------------------------
update/bugfix release
- various enhancements, including:
- performance improvements:
- skip validation when copying EasyConfig object for extension (#3071)
- correctly specify that ActiveMNS & co are singleton classes when using Python 3 (#3073)
- don't call out to prohibitively expensive getRootLoggerName in getLogger, just use 'root' instead (#3074)
- fix inconsistent module path usage that leads to repeated reloading in HMNS (#3099)
- add support for specifying different dependency version based on processor architecture (#3047)
- support use of glob patterns for paths to files with external modules metadata (#3075)
- take into account that external modules may not be visible directly (due to module hierarchy) (#3083)
- add support for including 'extensions' statement in Lua modules with Lmod 8.2.8+ (#3085, #3107, #3110)
- add support for --sync-pr-with-develop (#3087)
- add support for --new-branch-github, --new-pr-from-branch, --sync-branch-with-develop, --update-branch-github (#3103)
- fix typo in docstring for new_branch_github (#3106)
- various bug fixes, including:
- correctly handle iccifortcuda toolchain with standalone iccifort in det_toolchain_compilers (#3055)
- init git repo with git.repo.clone() instead of copy_dir() (#3062)
- fix regular expression so depends-on statements are recognized correctly in Tcl module files (#3065)
- update GitPython to latest version that supports Python 2.6 in requirements.txt to fix broken test_new_update_pr (#3066)
- imply --disable-pre-create-installdir with --inject-checksums (#3069)
- handle patches in extensions more like normal patches (#3067)
- take into account that platform.linux_distribution and platform.dist was removed in Python 3.8 (#3078)
- always include mandatory easyconfig parameters in dumped easyconfig (#3081)
- hide backup module file when using Lmod 6.x (fixes #9302) (#3089)
- add better error message when mandatory key is missing from a dictionary easyconfig parameter (#3092)
- also create symlinks for default modules in class module folders (#3093)
- fix semantics of --set-default-module: only set default for specified easyconfigs, not for the ones that are installed as dependencies via --robot (#3094)
- fix various issues in extracting comments from original easyconfig file and including them again in dumped easyconfig (#3095)
- don't use %(version)s template in exts_default_options in dumped easyconfig (#3096)
- fix generated module statements in case only a single version is listed in multi_deps (#3097)
- fix broken test_show_system_info on macOS due to 'Python' binary (#3105)
- take into account that dependency version could be a dict rather than a string value in template_constant_dict (#3111)
- other changes:
- deprecate running EasyBuild with Python 2.6 via new check_python_version() function (#3076)
- deprecate support for using Lmod 6.x (#3077)
- trim set of test configurations in Travis CI (#3086)
- flesh out env_vars_external_module from Toolchain._simulated_load_dependency_module (#3088)
v4.0.1 (October 15th 2019)
--------------------------
update/bugfix release
- various enhancements, including:
- add 'parallel' to list of config templates (#3036)
- add GitHub Actions workflow to run easybuild-framework test suite (#3039)
- add 'retest' as a reason to --close-pr, to close/re-open PRs to trigger re-test in Travis (#3040)
- define $EB_SCRIPT_PATH in 'eb' wrapper script, and consider it before location of 'eb' determined via $PATH in get_paths_for function (#3046)
- add support for --remove-ghost-install-dirs configuration option, and warn about (potential) ghost install dirs by default when --force/--rebuild is used (#3050)
- various bug fixes, including:
- update bootstrap script to support installing EasyBuild v4.0 (#3017)
- fix broken test_download_repo due to archiving of easyconfigs (#3019, #3023)
- avoid that --inject-checksums introduces list of patches for extensions as a single long line (#3025, #3034)
- enhance regex in fix_shebang method to fix more Python/Perl shebangs + avoid patching binary files (#3029)
- delete test gist that is created by --check-github (#3031)
- disable templates when defining easyconfig parameters in EasyConfig.set_keys() (#3037)
- avoid setting GC3Pie's max_in_flight to None if --job-max-jobs is not specified (#3038)
- fix use of obtain_file method for extensions (#3042)
- error out if some GC3Pie job failed (#3044)
v4.0.0 (September 20th 2019)
----------------------------
feature release (incl. backwards-incompatible changes)
A concise overview of major changes in EasyBuild v4.0 is available at https://easybuild.readthedocs.io/en/latest/EasyBuild4-overview-of-changes.html .
- fixed compatibility with Python 3.5+ (#2708, #2713, #2714, #2719, #2721, #2723, #2729, #2743, #2744, #2751, #2756, #2759, #2761, #2762, #2765, #2766, #2767, #2768, #2774, #2775, #2778, #2780, #2785, #2787, #2789, #2791, #2792, #2794, #2800, #2801, #2805, #2806, #2895, #2932, #2982, #2992, #3007, #3011)
- supported Python versions: 2.6, 2.7, 3.5, 3.6, 3.7
- some functionality from the Python standard library should be imported from the new easybuild.tools.py2vs3 package
- see https://easybuild.readthedocs.io/en/latest/Python-2-3-compatibility.html & https://easybuild.readthedocs.io/en/latest/EasyBuild4-overview-relocated-functions-constants.html for more information
- ingested relevant code from vsc-base & vsc-install (#2708, #2713, #2714, #2763, #2790, #2993)
- vsc-base & vsc-install are no longer required as dependencies
- the functionality that was provided by these packages is now (mostly) available from the easybuild.base package
- any import statements from the 'vsc' namespace will result in an error
- see also https://easybuild.readthedocs.io/en/latest/EasyBuild4-overview-of-changes.html#ingested-functionality-from-vsc-base-and-vsc-install and https://easybuild.readthedocs.io/en/latest/EasyBuild4-overview-relocated-functions-constants.html
- setuptools is longer required (neither for installing or using EasyBuild) (#2836, #2837, #2984, #2986, #2988)
- see also https://easybuild.readthedocs.io/en/latest/EasyBuild4-overview-of-changes.html#no-more-required-python-packages
- this required moving some classes and constants, see https://easybuild.readthedocs.io/en/latest/EasyBuild4-overview-relocated-functions-constants.html
- the 'dummy' toolchain is deprecated and replaced by the 'system' toolchain (#2877, #3001)
- if 'dummy' is still used as a toolchain in easyconfig files, a warning will be printed
- use "toolchain = SYSTEM" instead
- for more information, see https://easybuild.readthedocs.io/en/latest/System_toolchain.html
- a warning is printed when local variables in easyconfig file don't follow the recommended naming scheme (#2938, #2968)
- see also https://easybuild.readthedocs.io/en/latest/Easyconfig-files-local-variables.html
- names of software installation directories are independent of module naming scheme by enabling --fixed-installdir-naming-scheme by default (#2999)
- see https://easybuild.readthedocs.io/en/latest/EasyBuild4-overview-of-changes.html#fixed-installdir-naming-scheme-enabled-by-default for more information
- various other small enhancements, including:
- use requests instead of urllib2 for 403 errors (#2695)
- use pip requirements file in Travis (#2874)
- add support for --fix-deprecated-easyconfigs (#2881, 2898, #2938)
- add -L$EBROOTIMKL/lib/intel64 to $LDFLAGS for MKL (#2930)
- handle dict-type checksums in check_checksums_for (#2974)
- allow that icc & ifort are not actual dependencies in iccifort toolchain module (#2995)
- define mapping for iccifort->intel for iccifort compiler-only toolchain for HMNS (#2996)
- also consider concatenation of compiler module names to determine details of toolchain compiler component (#2997)
- update metadata for Cray-provided external modules (#3013)
- various bug fixes, including:
- update the PyPI trove classifiers in setup.py (#2875)
- reverse lists for $LDFLAGS and $CPPFLAGS (#2931)
- enhance/fix to_template_str function to do a better job at using template values in dumped easyconfigs (#2948)
- also take into account --filter-deps when finalizing parsed dependencies to fix problem with dependency filters using version ranges (#2983)
- fix broken --from-pr tests due to archiving of easyconfigs (#2985)
- fixes required to avoid breaking Cray support (#3008)
- fixes for --read-only-installdir: avoid crash with ModuleRC easyblock + also make log file in installdir read-only (#3012)
- other changes:
- add check to ensure that --robot argument specifies an existing directory (#2086)
- remove old scripts that are no longer useful (+ minor fixes to others) (#2897)
- use 'command -v' to avoid requiring 'which' in 'eb' command (#2979)
- add modluafooter & modtclfooter at the end of the generated module file (#3003)
- print warning when 'eb' command is not found in $PATH and for empty robot search path (#3006)
v3.9.4 (August 23rd 2019)
-------------------------
update/bugfix release
- various enhancements, including:
- add support for specifying checksum via dict providing a filename-to-checksum mapping (#2946)
- enhance 'completed' message with how much time was needed for the installation (#2956)
- add support for specifying tuple of alternative checksums (#2958)
- support using 'system' as alias for 'dummy' toolchain + SYSTEM constant (#2960)
- ensure 'docurls' easyconfig parameter value is a list of string values, not a single string value (#2963)
- automatically enable --ignore-osdeps when using --check-contrib or --check-style (#2965)
- various bug fixes, including:
- escape '+' in search queries + handle invalid search queries better (#2967)
- also consider extension patches when determining for which easyconfig a given patch file is intended in --new-pr/--update-pr (#2969)
- unset $CDPATH early on if it is defined (#2970)
- create specified temporary log directory if it doesn't exist yet in init_logging (#2972)
- don't indicate first multi_deps version as default in module help text when multi_deps_load_default=False (#2973)
- other changes:
- deprecate toolchains older than gompi/2016a and foss/2016a (#2951)
v3.9.3 (July 8th 2019)
----------------------
update/bugfix release
- various enhancements, including:
- add a URL whatis line to generated module files (#2933)
- various bug fixes, including:
- stick to Ubuntu Trusty when testing with Python 2.6 in Travis (#2928)
- honor --tmp-logdir when determining location of temporary log file (#2937)
v3.9.2 (June 9th 2019)
----------------------
update/bugfix release
- various enhancements, including:
- enhance (experimental) support for generating Singularity container recipes/images (#2884, #2900, #2902, #2903, #2907, #2909, #2910, #2913, #2915)
- add support for specifying container configuration via --container-config (--container-base option has been removed)
- add support for providing custom template for container recipe via --container-template-recipe
- add support for 'sif' Singularity 3.x container image format
- add support for specifying non-image based Singularity bootstrap agents
- install default set of OS packages in container recipes starting from scratch
- configure Lmod and update Lmod spider cache in generated Singularity container recipes
- configure EasyBuild via environment variables (to allow overriding configuration settings via options to 'eb' command)
- also consider /tmp/easybuild/sources in source path (to allow seeding in sources in container build environment)
- updated documentation is available at https://easybuild.readthedocs.io/en/latest/Containers.html
- various bug fixes, including:
- make sure that easyconfig file for EasyBuild version being bootstrapped is found in robot search path (#2899)
- remove interpreter options when fixing script shebang (#2905, #2906)
- fix crash on iterated installation when using Cray toolchains (#2914)
- disable checking of read/exec permissions when checking for availability of 'sudo' command (#2918)
- other changes:
- stick to vsc-base<2.9.0 in bootstrap script to avoid requiring 'future' dependency (#2892)
v3.9.1 (May 20th 2019)
----------------------
update/bugfix release
- various enhancements, including:
- add function to determine whether specified easyblock is generic or not (#2838)
- add support to apply_regex_substitutions function to skip creation of backup (#2844)
- add support for %(pymajver)s (& co) (#2850)
- add support for 'fix_python_shebang_for' and 'fix_perl_shebang_for' easyconfig parameters (#2878)
- add multi_deps information to generated module, help and whatis sections (#2882)
- add support for 'eb --missing' ('eb -M') (#2883)
- see also https://easybuild.readthedocs.io/en/latest/Using_the_EasyBuild_command_line.html#getting-an-overview-of-missing-installations-missing-m
- various bug fixes, including:
- only call 'scontrol release' when there's at least one job submitted (#2834)
- fix small bug in find_eb_script + various minor issues with tests (related to environment in which tests are run) (#2835)
- list build dependencies *before* runtime dependencies, so dependencies listed via multi_deps are loaded first in toolchain environment (#2839)
- allow setting parallel to 0 or False to disable adding the -j argument (#2842)
- be more careful when using single quotes for Tcl syntax (#2847)
- append to existing .modulerc file rather than overwriting it (if --force is used) (#2848)
- correctly resolve template values used for extensions (#2852)
- update template values after updating iterative easyconfig parameters (#2854)
- add top-level directories of hierarchical module naming scheme to $MODULEPATH before loading dependencies (#2857)
- inject dependencies specified via multi_deps before normal build dependencies (#2861)
- include Python version(s) in PR titles auto-generated by --new-pr (#2863, #2880)
- update HierarchicalMNS for GCCcore toolchain (#2870)
- bump iteration index counter at the correct time (#2886)
- don't specify --ntasks-per-node when submitting Slurm jobs (#2887)
- fix order of easyconfig parameters in output generated by 'eb --avail-easyconfig-params --output-format rst' (#2888)
- other changes:
- lower required version in Slurm job backend to 16.05 (#2833)
- add Lmod 8 to test suite (#2849)
- deprecate useless 'skip_lower' named argument in template_constant_dict, always define *lower templates (#2856)
- fix Python classifiers in setup.py, should be (only) Python 2.6 & 2.7 (#2876)
v3.9.0 (April 12th 2019)
------------------------
feature release
- various enhancements, including:
- add (pre)testopts easyconfig parameters (#2793)
- add support for multi_deps easyconfig parameter (#2741, #2810, #2811, #2812, #2813, #2825, #2826, #2827, #2828)
- various bug fixes, including:
- fix argument name in close_pr (#2752)
- fix undefined variable 'prefix' in Compiler._set_compiler_vars (#2757)
- fix test account for GitHub-related tests (#2760)
- make sure read permissions are always set in permissions_step (#2770)
- make test for dep_graph function robust against changing order of lines in resulting dot file (#2772)
- fix problem with import_available_modules when running from easybuild-framework directory (#2786)
- prepend location of test easyblocks to $PYTHONPATH to test_generate_software_list, rather than append (#2788)
- use pid in backup name candidate to reduce risk of two processes colliding (#2796)
- automatically enable --ignore-osdeps when using --preview-pr (#2799)
- use temporary checkout of repository as robot path for --new-pr and --update-pr to determine locations for patch files (#2803)
- avoid relying on order in which keys are processed in to_dependency (#2804)
- fix yeb format to work with PyYAML 5 (#2809)
- fix typo in error message for use of unknown easyconfig parameter (#2817)
- enhance log_file_format to fix problem when %(name)s template value is used for log directory (#2818)
- iterate over subdirectories in order in find_egg_dir_for of bootstrap script, to ensure oldest vsc-install is picked (#2819)
- replace -Wl,--enable-new-dtags compiler option with -Wl,--disable-new-dtags in RPATH wrapper script (#2821)
- updated COMPILER_F77 for PGI >= 19.1 (#2823)
- added FFTW_STATIC_LIBS_MT to FFTW_MAP_CLASS, otherwise FFTW_STATIC_LIBS_MT are incorrectly defined (#2822)
- sort available version list when selecting/generating easyconfig (#2732)
- other changes:
- use assertEqual rather than assertEquals (which is deprecated) (#2746)
- test with Tmod 4.1.4 (packaged in RHEL8) in Travis CI (#2747)
- replace deps by hidden deps instead of removing them from the lists (#2748)
- ensure non-zero exit code for all test subsuites (+ fix trivial style issues) (#2773)
- silence printed deprecation warnings for easyconfigs/toolchains while running (easyconfigs) test suite (#2781)
- avoid printing of messages/warnings in framework test suite (#2782)
- enable silent mode for --new-pr and --update-pr (#2802)
- update Travis config to reflect that PyYAML 5.x is no longer compatible with Python 2.6 (#2807)
v3.8.1 (January 29th 2019)
--------------------------
bugfix release
- various minor enhancements, including:
- speed up checking of OS dependencies (#2703)
- add support for 'eb --show-system-info' (#2722)
- add support for '%(arch)s' template value in easyconfig files (x86-64, aarch64, ppc64le, ...) (#2728)
- various bug fixes, including:
- add timestamp to reprod dir while in tmp space (#2705)
- avoid '+' in directory name for g++ rpath wrapper (#2710)
- pre-install vsc-install < 0.11.4 in bootstrap script to avoid requiring 'mock' Python package (#2717)
- fix check in --merge-pr whether PR is eligible for merging in to only consider the status of the last test report (#2720)
- don't recreate build directory when 'buildininstalldir' is enabled for iterative installations (#2724)
- filter (CUDA) lib*/stubs paths in RPATH wrapper script (#2725)
- other changes:
- replace 'except IOError, err:' pattern with 'except IOError as err:' for compatibility with Python 3.x (#2711)
- make all print statements compatible with Python 3 (#2715)
- avoid use of sys.maxint in dependencies_for (#2716)
v3.8.0 (December 18th 2018)
---------------------------
feature release
- various enhancements, including:
- support use of version ranges in --filter-deps (#2357)
- add support for --list-prs (#2400, #2668)
- add support for --close-pr (#2401)
- allow setting optarch compiler flags in the easyconfig via toolchainopts easyconfig parameter (#2595)
- add option to skip pre-creation of install directory: --disable-pre-create-installdir (#2629, #2637)
- flesh out setting up of configuration into dedicated 'set_up_configuration' function (#2638)
- clean error when 'eb' is cancelled by user (#2641)
- add support for using Slurm as backend for --job, via --job-backend=Slurm (#2642, #2666)
- save easyblocks along with easyconfig in 'reprod' subdirectory of install directory (#2653)
- add support for deprecating easyconfig files & toolchains (#2656)
- changed easyconfig.update to be able to specify not to allow duplicate values (#2657)
- move adding of dependencies to prepare step instead of check readiness step (#2674)
- add support for disabling mapping of (sub)toolchains when --try-toolchain is used, via --disable-map-toolchains (#2682)
- add 'astro' and 'quantum' module classes (#2693)
- various bug fixes, including:
- make --from-pr always try to apply PR patch on top of PR target branch (#2631)
- fix bug that could cause to silently overwrite an existing easyconfig when using --try-* (#2635)
- don't pass down specific environment variables into submitted jobs (#2643)
- update template constants for source URLs to use https (#2648)
- fix lib64 fallback for 'lib'/'lib64' dirs entry in sanity_check_paths (#2649)
- change PGI F90 Fortran compiler to pgf90 (#2650)
- use --set-upstream-to in install-EasyBuild-develop.sh script to deal with deprecated/no longer supported --set-upstream (#2651)
- fix order of keys in 'toolchain' value for dumped easyconfig file (name, version) + run style check on dumped easyconfigs in dump tests (#2660)
- ensure checksums beside sources in dumped easyconfigs (#2661)
- fix problems with easyconfig file saved in 'reprod' directory by copying it before running any installation steps (#2664)
- make print functions more robust w.r.t. arguments being passed to format the message to be printed (#2670)
- use 'git am' to apply patch for PRs in fetch_easyconfigs_from_pr (#2680)
- correctly define $LIBFFT_MT for Intel MKL (#2688)
- don't always require easyconfig files to resolve dependencies (#2690, #2692, #2697, #2698, #2699)
- fixes for Travis CI config:
- stop testing with Lmod 6.6.3, testing with Lmod 6.5.1 is sufficient (#2627)
- Python 2.6 requires python-daemon 1.x as dep for GC3Pie (#2673)
- stick to idna<2.8 with Python 2.6 in Travis + distable broken test for HgRepository (#2678)
- other changes:
- always skip symlinks in adjust_permissions (#2644)
- flesh out 'avail_easyblocks' function from support for --list-easyblocks (#2663)
- deprecate the ictce toolchain (#2667)
- deprecate goolf and goolfc toolchains (#2676)
- deprecate intel toolchains older than intel/2016a (+ iccifort & iimpi subtoolchains) (#2677)
- deprecate ancient gompi toolchain versions (#2684)