Releases: PhysiCell-Tools/PhysiCell-Studio
Releases · PhysiCell-Tools/PhysiCell-Studio
v2.27.1 - improved Rules tab; new startup args
- included factor 10 to the saturation value
- included base value on rules_table (hidden)
- changed saturation value for the unknown base value
- plot of rules_table scaled based on the base value
- fix params in config/virus_macrophage.xml
- update studio command line args
v2.27.0 - startup options, bug fixes, functionality; PhysiBoSS improvements
- add
-p
option as startup argument: use config/PhysiCell_settings.xml; if not present and not-c
, copy template.xml into /config - ICs: ring geometry option
- View -> Plot options: cell nucleus
- several bug fixes for Rules tab
- add
damage rate
behavior to rules - many PhysiBoSS (boolean intracellular) related improvements for Plot and Run tabs (thanks Vincent Noël !)
- added environment.yml file to create the conda env
v2.26.12 - ring ICS; Sync option for outputs; bug fixes
- merge fixes for discrete colormaps
- check that executable exists before running a simulation
Save user project
also get a copy of the current .xml- try-except on XML parsing
- add a
ring
geometry option for ICS - add a
Sync
option for SVG, Full output intervals
v2.26.11 - bug fix for Plot Select dir
- share rules_tab with all vis classes
- fix bug for custom ECM plot to advance frame
v2.26.10 - bug fix for colormaps; new workflow for startup
- fix colormap bug when switching from discrete to continuous cell scalars (thanks Heber Rocha!)
- fix bug for Save/Load user project, if user hits Cancel
- introduce a cmaps.py module that contains colors for discrete (categorical) data
- cmaps.py uses the same ~13 colors at the start as defined in PhysiCell (/modules/PhysiCell_pathology.cpp: paint_by_number_cell_coloring()), but otherwise, adopts https://colorcet.holoviz.org/user_guide/Categorical.html#color-space
- studio.py now uses a new workflow: if no config file provided on command line, it will force use of the template project
- README now just links to Guide
v2.26.9 - fix Plot bug to advance 1 frame
- fix forward_plot_cb bug
v2.26.8 - script to download Studio; ECM updates
- get_studio.py will download the latest release and create (or overwrite) a /studio directory
- updates for the custom ECM Studio
v2.26.7 - bug fixes for Plot Select output dir
- Run tab also saves copy to PhysiCell_settings.xml in output dir
- lots more args to vis classes for Plot Select output dir
v2.26.6 - various Plot-related improvements
- force View->Plot options to foreground
- fix show grids bug
- check for and use PhysiCell_settings.xml if present in Plot Select directory
- fix plot bug when SVG not saved (thanks to Elmar Bucher for reporting)
v2.26.5 - Import in ICs; add colormaps
- currently only allow importing v2 syntax of cells.csv in ICs