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Releases: PhysiCell-Tools/PhysiCell-Studio

v2.27.1 - improved Rules tab; new startup args

01 Aug 19:37
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  • included factor 10 to the saturation value
  • included base value on rules_table (hidden)
  • changed saturation value for the unknown base value
  • plot of rules_table scaled based on the base value
  • fix params in config/virus_macrophage.xml
  • update studio command line args

v2.27.0 - startup options, bug fixes, functionality; PhysiBoSS improvements

30 Jul 16:44
f6ab0af
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  • add -p option as startup argument: use config/PhysiCell_settings.xml; if not present and not -c, copy template.xml into /config
  • ICs: ring geometry option
  • View -> Plot options: cell nucleus
  • several bug fixes for Rules tab
  • add damage rate behavior to rules
  • many PhysiBoSS (boolean intracellular) related improvements for Plot and Run tabs (thanks Vincent Noël !)
  • added environment.yml file to create the conda env

v2.26.12 - ring ICS; Sync option for outputs; bug fixes

23 Jul 14:05
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  • merge fixes for discrete colormaps
  • check that executable exists before running a simulation
  • Save user project also get a copy of the current .xml
  • try-except on XML parsing
  • add a ring geometry option for ICS
  • add a Sync option for SVG, Full output intervals

v2.26.11 - bug fix for Plot Select dir

16 Jul 15:46
6ef6203
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  • share rules_tab with all vis classes
  • fix bug for custom ECM plot to advance frame

v2.26.10 - bug fix for colormaps; new workflow for startup

15 Jul 21:12
68081f5
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  • fix colormap bug when switching from discrete to continuous cell scalars (thanks Heber Rocha!)
  • fix bug for Save/Load user project, if user hits Cancel
  • introduce a cmaps.py module that contains colors for discrete (categorical) data
  • cmaps.py uses the same ~13 colors at the start as defined in PhysiCell (/modules/PhysiCell_pathology.cpp: paint_by_number_cell_coloring()), but otherwise, adopts https://colorcet.holoviz.org/user_guide/Categorical.html#color-space
  • studio.py now uses a new workflow: if no config file provided on command line, it will force use of the template project
  • README now just links to Guide

v2.26.9 - fix Plot bug to advance 1 frame

14 Jul 01:30
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v2.26.8 - script to download Studio; ECM updates

12 Jul 01:28
dfb1512
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  • get_studio.py will download the latest release and create (or overwrite) a /studio directory
  • updates for the custom ECM Studio

v2.26.7 - bug fixes for Plot Select output dir

10 Jul 12:03
de8c846
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  • Run tab also saves copy to PhysiCell_settings.xml in output dir
  • lots more args to vis classes for Plot Select output dir

v2.26.6 - various Plot-related improvements

09 Jul 16:38
c3f77e7
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  • force View->Plot options to foreground
  • fix show grids bug
  • check for and use PhysiCell_settings.xml if present in Plot Select directory
  • fix plot bug when SVG not saved (thanks to Elmar Bucher for reporting)

v2.26.5 - Import in ICs; add colormaps

20 Jun 18:16
ff39dc7
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  • currently only allow importing v2 syntax of cells.csv in ICs