You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
Hi!
After loading the study
How could I use them in maftool by reading maf?
tcga_load("luad")
Loading LUAD. Please cite: https://doi.org/10.1016/j.cels.2018.03.002 for reference
An object of class MAF
ID summary Mean Median
1: NCBI_Build NA NA NA
2: Center NA NA NA
3: Samples 517 NA NA
4: nGenes 17130 NA NA
5: Frame_Shift_Del 4021 7.778 5
6: Frame_Shift_Ins 1185 2.292 1
7: In_Frame_Del 388 0.750 0
8: In_Frame_Ins 37 0.072 0
9: Missense_Mutation 133671 258.551 177
10: Nonsense_Mutation 11074 21.420 13
11: Nonstop_Mutation 179 0.346 0
12: Splice_Site 4469 8.644 5
13: Translation_Start_Site 225 0.435 0
14: total 155249 300.288 202
I tired...
maftools::read.maf(rbind(tcga_luad@data))
Error in rbind(tcga_luad@data) : object 'tcga_luad' not found
or
luad = read.maf(maf = 'inst/extdata/MC3/luad.RDs')
-Reading
Error in data.table::fread(file = maf, sep = "\t", stringsAsFactors = FALSE, :
File 'inst/extdata/MC3/luad.RDs' does not exist or is non-readable. getwd()=='/Users/dingdingdingplus'
Thank you very much!
The text was updated successfully, but these errors were encountered:
Hi!
After loading the study
How could I use them in maftool by reading maf?
I tired...
or
Thank you very much!
The text was updated successfully, but these errors were encountered: