MONAI Bundle inference doesn't work: no valid.csv file found #493
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lukasvanderstricht
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Hello everyone!
For the first time, I am working with MONAI Bundle. Up till now, I have only worked with MONAILabel to create models for automatic segmentation. I would however want to take a look at the
Prostate mri anatomy
dataset from the MONAI Model Zoo. As this is my first experience with the MONAI Bundle format, I followed the YouTube tutorial for MONAI Bundle, for which the used code can be found here. Here, the Task09_Spleen dataset is downloaded to a temporary directory and theSpleen ct segmentation
model from the model zoo is downloaded locally.I executed the code in this tutorial line by line and everything seems to work up till the point where I tried starting the inference process. When I ran the following command:
python -m monai.bundle run evaluating --meta_file "./model_prostate/configs/metadata.json" --config_file "./model_prostate/configs/inference.json" --logging_file "./model_prostate/configs/logging.conf" --dataset_dir "/tmp/tmpi1hkcnjl/Task09_Spleen" --bundle_root "./model_prostate"
, I get the following error:Does anyone know what I'm doing wrong?
Thanks in advance!
Kind regards
Lukas
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