274 add multi organ segmentation bundle #275
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Hi @cshen0625 @holgerroth , May I know the status and plan for this PR? Thanks. |
@cshen0625 is currently retraining this model with a 1.2 rc as we ran into compatibility issues with the old checkpoints. Should be done soon. |
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@holgerroth @Nic-Ma |
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Thanks for the updates @cshen0625 , I will review it again soon! |
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holgerroth
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Jul 11, 2023
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yiheng-wang-nv
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Jul 29, 2024
Fixes Project-MONAI#274 ### Description Add multi-organ segmentation bundle for abdominal CT images. ### Status **Ready** ### Please ensure all the checkboxes: <!--- Put an `x` in all the boxes that apply, and remove the not applicable items --> - [x] Codeformat tests passed locally by running ./runtests.sh --codeformat. - [ ] In-line docstrings updated. - [x] Update `version` and `changelog` in `metadata.json` if changing an existing bundle. - [x] Please ensure the naming rules in config files meet our requirements (please refer to: `CONTRIBUTING.md`). - [x] Ensure versions of packages such as `monai`, `pytorch` and `numpy` are correct in `metadata.json`. - [x] Descriptions should be consistent with the content, such as `eval_metrics` of the provided weights and TorchScript modules. - [x] Files larger than 25MB are excluded and replaced by providing download links in `large_file.yml`. - [x] Avoid using path that contains personal information within config files (such as use `/home/your_name/` for `"bundle_root"`). --------- Signed-off-by: monai-bot <[email protected]> Signed-off-by: Holger Roth <[email protected]> Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: Yiheng Wang <[email protected]> Co-authored-by: Yiheng Wang <[email protected]> Co-authored-by: monai-bot <[email protected]> Co-authored-by: Holger Roth <[email protected]> Co-authored-by: Holger Roth <[email protected]>
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Fixes #274
Description
Add multi-organ segmentation bundle for abdominal CT images.
Status
Ready
Please ensure all the checkboxes:
versionandchangeloginmetadata.jsonif changing an existing bundle.CONTRIBUTING.md).monai,pytorchandnumpyare correct inmetadata.json.eval_metricsof the provided weights and TorchScript modules.large_file.yml./home/your_name/for"bundle_root").