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Reaction network #13

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justinlaughlin opened this issue Nov 22, 2019 · 1 comment
Open

Reaction network #13

justinlaughlin opened this issue Nov 22, 2019 · 1 comment
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@Rabona17 @willxu1234
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enhancement: non-critical A nice enhancement to have but not critical to the alpha release

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@justinlaughlin
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Implement ability to generate a reaction network from a model file.

Pysb and NetworkX are two packages to check out.
@justinlaughlin justinlaughlin added the enhancement: non-critical A nice enhancement to have but not critical to the alpha release label Nov 22, 2019
@Rabona17
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Rabona17 commented Mar 3, 2020

Benefits:
Allows user to check the reaction process by presenting a visualized reaction graph. Users will be able to check the value of fluxes manually.

Use cases:
When the user wants to visualize the reaction process.

Sub issues:
1.Needs to find a good way to assemble fluxes that happened on only one side of the compartment
2.Testing required

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@Rabona17 Rabona17

@willxu1234 willxu1234

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enhancement: non-critical A nice enhancement to have but not critical to the alpha release
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@justinlaughlin @Rabona17 @willxu1234