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Styling regulatory interactions #109

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ctrlaltaf opened this issue Jun 6, 2024 · 2 comments
Open

Styling regulatory interactions #109

ctrlaltaf opened this issue Jun 6, 2024 · 2 comments
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enhancement New feature or request summer project

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@ctrlaltaf
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How do we visualize these regulatory interactions in conjunction with the visualization we have?

@ctrlaltaf ctrlaltaf added enhancement New feature or request summer project labels Jun 6, 2024
@oliverfanderson
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Ideas:

  • What to do with nodes with only "gene_name" (i.e. no protein in our original PPI)? Display warning that this is a TF/gene only?
  • Directed edges with arrows
  • Could use dashed or dotted lines to indicate Reg edge type
  • Edges toggleable/alternate view for Reg edges
  • Inhibitory vs Activation edges: blunt ends for inhibition, arrow tips for activation.
    • Add property to regulatory edges
    • Get property when clicked (tooltip in viz or on sidebar)
    • Could color code alternatively/as well

@oliverfanderson
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oliverfanderson commented Jul 29, 2024

To do:

  • Add legend describing new Reg edge types
  • Add blunt or arrow tip
  • Consider do we want red edges? Other color ideas for the edges?

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Labels
enhancement New feature or request summer project
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