diff --git a/ecobidas/inputs/neurovault/neurovault.tsv b/ecobidas/inputs/neurovault/neurovault.tsv index b73c3998..4cc110f9 100644 --- a/ecobidas/inputs/neurovault/neurovault.tsv +++ b/ecobidas/inputs/neurovault/neurovault.tsv @@ -1,88 +1,88 @@ activity_pref_label activity_order item_order question unit details field_type choices item item_pref_label visibility validation item_description include mandatory preamble bids_status bids_file bids_key bids_key_for_unit UUID -Experimental design 1 1 Type of design select blocked | event_related | hybrid block/event type_of_design type of design 1 type of design 1 1 Describe your experimental design 5f49e6f7-d89a-425a-8c82-c23227d511e9 -Experimental design 1 2 Number of imaging runs acquired integer 0 number of imaging runs 1 number of imaging runs 1 2 8d993091-6d9a-4e67-82be-c1dffd5341b8 -Experimental design 1 3 Number of blocks, trials or experimental units per imaging run integer 0 number of experimental units 1 number of experimental units 1 2 6a5da0c8-c774-42a6-8786-8d660e4a7f17 -Experimental design 1 4 Length of each imaging run seconds float 0 length of runs 1 length of runs 1 2 9a2dea63-f965-4678-ac63-ded9a3ef662a -Experimental design 1 5 For blocked designs, length of blocks seconds float 0 length of blocks type_of_design in [0, 2] length of blocks 1 2 ba7e3820-5747-4179-9960-6d163c9495ee -Experimental design 1 6 Length of individual trials seconds float 0 length of trials 1 length of trials 1 2 3751d7dc-f033-4710-ba8e-80e2970709ef -Experimental design 1 7 Was the design optimized for efficiency? radio preset:boolean optimization 1 optimization 1 2 a74d9633-5ae2-4127-b3af-b7a5bf39f593 -Experimental design 1 8 What method was used for optimization? textarea optimization method optimization == 1 optimization method 1 3 be4c5ba2-2701-4122-b5c7-b07174f8c26b -Participants 2 1 Number of subjects entering into the analysis integer 0 number of subjects 1 number of subjects 1 1 Describe your participant sample 96931224-bb67-4036-966a-29681a9a600f -Participants 2 2 Mean age of subjects float 0 | 120 subject_age_mean subject age mean 1 subject age mean 1 1 c47a2073-fc80-44b4-b79f-990d52d035b4 -Participants 2 3 Minimum age of subjects float 0 | 120 subject_age_min subject age min 1 subject_age_min > subject_age_mean, minimum age must be less than mean age subject age min 1 2 0d524a5d-64a2-4feb-90df-cd735ff740bd -Participants 2 4 Maximum age of subjects float 0 | 120 subject_age_max subject age max 1 subject_age_max < subject_age_mean, maximum age must be more than mean age subject age max 1 2 7d75db71-a6f2-48d5-9c08-d2b388412d40 -Participants 2 5 Handedness of subjects radio right | left | both handedness 1 handedness 1 2 b545ad14-26b4-4e02-abd3-a4cb50c34b84 -Participants 2 6 The proportion of subjects who were male float 0 | 1 proportion male subjects 1 proportion male subjects 1 2 2c131b71-df35-4c47-9bf3-f4363912abce -Participants 2 7 Additional inclusion/exclusion criteria, if any. Including specific sampling strategies that limit inclusion to a specific group, such as laboratory members. textarea inclusion exclusion criteria 1 inclusion exclusion criteria 1 3 b10dbc99-ec74-4f25-87cd-45fdbba5af8a -Participants 2 8 Number of subjects scanned but rejected from analysis integer 0 number of rejected subjects 1 number of rejected subjects 1 2 fcedde9a-986b-4efd-a0a7-b20495a5b7d0 -Participants 2 9 Was this study a comparison between subject groups? radio preset:boolean group comparison 1 group comparison 1 1 980dda7c-c5d0-4f05-8336-79af1e15e57c -Participants 2 10 A description of the groups being compared textarea group description group_comparison == 1 group description 1 2 5d470c8a-5925-44e8-af7e-3c64de3899a8 -MRI acquisition 3 1 Manufacturer of MRI scanner select Siemens | Philips | General Electric | other Manufacturer scanner make 1 scanner make 1 1 Describe your acquisition parameters 03687a74-6693-4fd8-801e-b6a819d60652 -MRI acquisition 3 2 Model of MRI scanner textarea ManufacturersModelName scanner model 1 scanner model 1 1 4309a974-4f66-423e-aced-4ec0de0e9114 -MRI acquisition 3 3 Field strength of MRI scanner Tesla float 0 | 20 MagneticFieldStrength field strength 1 field strength 1 1 019d1bb3-b4a2-487e-befd-8fb336af230c -MRI acquisition 3 4 Description of pulse sequence used for fMRI select Gradient echo | Spin echo | Mutliband gradient echo | MPRAGE | MP2RAGE | FLASH | other PulseSequenceType pulse sequence 1 pulse sequence 1 1 a64de113-7926-4c04-bd4d-e660354ab728 -MRI acquisition 3 5 Description of parallel imaging method and parameters textarea parallel imaging 1 parallel imaging 1 3 b47c0e8a-e540-4d24-afbf-532e1bc63972 -MRI acquisition 3 6 Imaging field of view Millimeters float field of view 1 field of view 1 2 3ed67554-32d3-4ffb-8065-0d7e081609c6 -MRI acquisition 3 7 Matrix size for MRI acquisition integer matrix size 1 matrix size 1 2 b2059a75-03ca-4105-9f6b-1c15d48c146a -MRI acquisition 3 8 Distance between slices (includes skip or distance factor). Millimeters float 0 slice thickness 1 slice thickness 1 1 56dae73a-5ca2-4e57-a82c-49e8e006a665 -MRI acquisition 3 9 The size of the skipped area between slices. Millimeters float 0 skip factor 1 skip factor 1 2 b6110941-9fe5-4646-8d9f-6f88199c0fff -MRI acquisition 3 10 The orientation of slices radio axial | sagittal | frontal acquisition orientation 1 acquisition orientation 1 2 a48e252d-9f08-4f00-aa47-6e996caaf2e3 -MRI acquisition 3 11 Order of acquisition of slices select ascending | descending | interleaved SliceTiming order of acquisition 1 order of acquisition 1 3 836d855a-9fcb-410f-9c42-0cc4400facc7 -MRI acquisition 3 12 Repetition time (TR) Milliseconds float 0 RepetitionTime repetition time 1 repetition time 1 1 247815b3-fc87-49af-ad97-21ae8b198c17 -MRI acquisition 3 13 Echo time (TE) Milliseconds float 0 EchoTime echo time 1 echo time 1 1 05b2abdb-95ed-49b6-a1c1-57db7726b3f1 -MRI acquisition 3 14 Flip angle Degrees float 0 FlipAngle flip angle 1 flip angle 1 2 93e2b351-ac07-4e55-b687-a8c8dcb3468e -Preprocessing 4 1 If a single software package was used for all analyses, specify that here select preset:mri_softwares SoftwareName software package 1 software package 1 1 Describe your preprocessing 82959d50-ef2e-4466-8f27-b49f7d90e034 -Preprocessing 4 2 Version of software package used textarea SoftwareVersion software version 1 software version 1 1 193f35b6-0471-451a-be63-9d338e335410 -Preprocessing 4 3 Specify order of preprocessing operations textarea order of preprocessing operations 1 order of preprocessing operations 1 2 e422d665-5fca-4d47-9172-5d6d6c3e0bb6 -Preprocessing 4 4 Describe quality control measures textarea quality control 1 quality control 1 3 b31532d6-5129-4c5e-aaa3-d94ebbc71928 -Preprocessing 4 5 Was B0 distortion correction used? radio preset:boolean used b0 unwarping 1 used b0 unwarping 1 2 9671667b-8650-42fd-9439-e0b961b5678d -Preprocessing 4 6 Specify software used for distortion correction if different from the main package select preset:mri_softwares b0 unwarping software used_b0_unwarping == 1 b0 unwarping software 1 3 7542fb15-c8dc-4228-8b69-f092b7b674b5 -Preprocessing 4 7 Was slice timing correction used? radio preset:boolean used slice timing correction 1 used slice timing correction 1 1 ab041aff-5873-4447-b737-462c8b6f88f9 -Preprocessing 4 8 Specify software used for slice timing correction if different from the main package select preset:mri_softwares slice timing correction software used_slice_timing_correction == 1 slice timing correction software 1 3 3362e178-8120-40b2-9dbe-cb0c7869b262 -Preprocessing 4 9 Was motion correction used? radio preset:boolean used motion correction 1 used motion correction 1 1 1f085b72-7afc-487e-aea0-23f19396ce70 -Preprocessing 4 10 Specify software used for motion correction if different from the main package select preset:mri_softwares motion correction software used_motion_correction == 1 motion correction software 1 3 36594fc8-01dd-4211-82d7-de48752ce91d -Preprocessing 4 11 Reference scan used for motion correction textarea motion correction reference used_motion_correction == 1 motion correction reference 1 3 832f3af1-6389-4df5-80af-ccb1310a3dbf -Preprocessing 4 12 Similarity metric used for motion correction select preset:cost_functions motion correction metric used_motion_correction == 1 motion correction metric 1 3 292b2965-9a9b-494d-a6f6-90a383cb1abc -Preprocessing 4 13 Interpolation method used for motion correction select preset:interpolations motion correction interpolation used_motion_correction == 1 motion correction interpolation 1 3 f88a6891-ee75-4bc2-be06-7f49b46f2302 -Preprocessing 4 14 Was motion-susceptibility correction used? radio preset:boolean used motion susceptibiity correction 1 used motion susceptibiity correction 1 3 3407426a-b933-4907-819c-5c73fe129226 -Intersubject registration 5 1 Were subjects registered to a common stereotactic space? radio preset:boolean used intersubject registration 1 used intersubject registration 1 1 Describe your spatial normalization 4711975f-2a8d-44cc-9f4e-e64ee98e0f19 -Intersubject registration 5 2 Specify software used for intersubject registration if different from main package select preset:mri_softwares intersubject registration software used_intersubject_registration == 1 intersubject registration software 1 2 9016bdf7-8e87-4ff7-afab-e4f86c723f1c -Intersubject registration 5 3 Was linear or nonlinear registration used? select linear | non-linear intersubject transformation type used_intersubject_registration == 1 intersubject transformation type 1 1 461b7965-4a11-4d17-8759-f95ef75edffa -Intersubject registration 5 4 If nonlinear registration was used, describe transform method textarea nonlinear transform type used_intersubject_registration == 1 and nonlinear_transform_type == 1 nonlinear transform type 1 2 d39e824b-9a49-4a40-8b7f-ab340def8327 -Intersubject registration 5 5 Similarity metric used for intersubject registration textarea transform similarity metric used_intersubject_registration == 1 transform similarity metric 1 3 b1b8645e-226f-455a-b670-7bbe71d9b413 -Intersubject registration 5 6 Interpolation method used for intersubject registration select preset:interpolations interpolation method used_intersubject_registration == 1 interpolation method 1 2 bbad1e21-2038-46f1-9c81-842ef6d0ed24 -Intersubject registration 5 7 What type of image was used to determine the transformation to the atlas? textarea object image type used_intersubject_registration == 1 object image type 1 1 96409139-c354-4d40-876d-83fb2ba07b86 -Intersubject registration 5 8 Were the functional images coregistered to the subject's structural image? radio preset:boolean functional coregistered to structural 1 functional coregistered to structural 1 2 7d83b2b0-63ce-44fb-a916-b18e8de7304a -Intersubject registration 5 9 Method used to coregister functional to structural images textarea functional coregistration method functional_coregistered_to_structural == 1 functional coregistration method 1 3 769faf6a-ce83-4e58-bc55-c4a7b9213440 -Intersubject registration 5 10 Name of coordinate space for registration target select MNI | Talairach | MNI2Tal | other coordinate space 1 coordinate space 1 1 a7716bb4-faee-4b04-85fd-e45ea4463bc1 -Intersubject registration 5 11 Name of target template image textarea target template image 1 target template image 1 2 bdf40cd2-b8db-48b7-8672-c7a012c6c5af -Intersubject registration 5 12 Voxel size of target template Millimeters float 0 target resolution 1 target resolution 1 1 e0802e6c-5060-490a-b39d-70363f49e4d8 -Intersubject registration 5 13 Was spatial smoothing applied? radio preset:boolean used smoothing 1 used smoothing 1 1 88c9800f-70aa-4bea-a79b-476b0c4322d0 -Intersubject registration 5 14 Describe the type of smoothing applied textarea smoothing type used_smoothing == 1 smoothing type 1 1 2a58580a-1930-43b5-a576-4a71e284692d -Intersubject registration 5 15 The full-width at half-maximum of the smoothing kernel Millimeters float 0 smoothing fwhm used_smoothing == 1 smoothing fwhm 1 1 93bb9f27-302b-45bd-8d4e-723de5a8626d -Intersubject registration 5 16 Voxel size in mm of the resampled, atlas-space images float 0 resampled voxel size 1 resampled voxel size 1 1 272b3c91-144b-48b8-be08-854938771eb2 -Individual subject modeling 6 1 Type of group model used radio Regression | other intrasubject model type 1 intrasubject model type 1 1 Describe your model specification at the subejct level 58d9c404-0e00-41d3-a479-fd9cacf8a934 -Individual subject modeling 6 2 Estimation method used for model select ordinary least squares | generalized least squares | other intrasubject estimation type 1 intrasubject estimation type 1 1 34e453f6-6a13-44c7-a6fa-83826d3a9c00 -Individual subject modeling 6 3 Software used for intrasubject modeling if different from overall package select preset:mri_softwares intrasubject modeling software 1 intrasubject modeling software 1 2 3d94e8a8-ad8b-4229-9ffc-b4df29a81b65 -Individual subject modeling 6 4 Nature of HRF model select spm HRF | glover HRF | double gamma | Fourrier set | Finite Impulse Response | FLOBS | other hemodynamic response function 1 hemodynamic response function 1 2 d6cec9a0-f216-4fb1-84a0-8b5c937788e2 -Individual subject modeling 6 5 Were temporal derivatives included? radio preset:boolean used temporal derivatives 1 used temporal derivatives 1 2 00416700-7b70-493b-b589-125fbc86b59c -Individual subject modeling 6 6 Were dispersion derivatives included? radio preset:boolean used dispersion derivatives 1 used dispersion derivatives 1 3 58546f5f-029d-41e2-9f2d-aefe28cb0ea3 -Individual subject modeling 6 7 Were motion regressors included? radio preset:boolean used motion regressors 1 used motion regressors 1 2 6e0f0323-cec9-4a32-9063-6041c879dbbe -Individual subject modeling 6 8 Was a reaction time regressor included? radio preset:boolean used reaction time regressor 1 used reaction time regressor 1 2 1632ddc2-bba1-448b-a561-1e8bf889186f -Individual subject modeling 6 9 Were any regressors specifically orthogonalized with respect to others? radio preset:boolean used orthogonalization 1 used orthogonalization 1 1 59ea4fd0-cfbd-42d6-b78c-0c34dca388e6 -Individual subject modeling 6 10 If orthogonalization was used, describe here textarea orthogonalization description used_orthogonalization == 1 orthogonalization description 1 2 5d3a44b3-3e03-4577-9926-53d4e225ec38 -Individual subject modeling 6 11 Was high pass filtering applied? radio preset:boolean used high pass filter 1 used high pass filter 1 1 5f28abca-0592-4d8d-9532-04ee9ad94bb6 -Individual subject modeling 6 12 Describe method used for high pass filtering textarea high pass filter method used_high_pass_filter == 1 high pass filter method 1 2 c186ca84-4430-4528-ad5f-511acce9fe2a -Individual subject modeling 6 13 What autocorrelation model was used ? select SPM: global approximate AR(1) | SPM: FAST | FSL: locally regularized autocorrelation function | AFNI: ARMA | none | other autocorrelation model 1 autocorrelation model 1 2 0893960b-91c7-4e54-8f5f-b41f373ae0d8 -Individual subject modeling 6 14 Exactly what terms are subtracted from what? textarea contrast definition 1 contrast definition 1 1 395bd134-a139-4deb-b65b-b78da457e696 -Individual subject modeling 6 15 Link to Cognitive Atlas definition of this contrast Define these in terms of task or stimulus conditions (for example 'one-back task with objects versus zero-back task with objects') instead of underlying psychological concepts (for example 'working memory'). textarea contrast definition cogatlas 1 contrast definition cogatlas 1 3 246f930a-484e-4d70-a664-4ececd631ada -Group modeling 7 1 Type of group model used select Regression group model type 1 group model type 1 1 Describe the group level analysis 274e9db4-2013-4b5f-9c61-954558d1e6a2 -Group modeling 7 2 Estimation method used for model select ordinary least squares | generalized least squares | other group estimation type 1 group estimation type 1 1 abc21c82-11da-42e4-8a01-f1c7aa2e3b77 -Group modeling 7 3 Software used for group modeling if different from overall package select preset:mri_softwares group modeling software 1 group modeling software 1 2 6c85b32a-c968-4f69-bf82-30ec303d5ee5 -Group modeling 7 4 Type of inference for group model select random effect | mixed effect | fixed effect group inference type 1 group inference type 1 1 117599dc-d036-49f3-bd0d-d1a18ac804db -Group modeling 7 5 If more than 2-levels, describe the levels and assumptions of the model. For example, are variances assumed equal between groups. textarea group model multilevel 1 group model multilevel 1 3 c1d62989-9d2a-4947-8731-7dfd9b06fb4f -Group modeling 7 6 Was this a repeated measures design at the group level? radio preset:boolean group repeated measures 1 group repeated measures 1 1 9d52c2b1-84db-4151-89de-c3ce1d51288d -Group modeling 7 7 If multiple measurements per subject, list method to account for within subject correlation, exact assumptions made about correlation/variance textarea group repeated measures method group_repeated_measures == 1 group repeated measures method 1 3 5ecb4cfd-88ed-4cfb-9368-a5fe30d1e12f -Group inference 8 1 Type of statistic that is the basis of the inference select Z | T | F | X2 | PostProb | Non-parametric Permutations | Monte Carlo Permutations | other group statistic type 1 group statistic type 1 2 Describe your statistical inference 54fb8092-087f-4a6c-b433-bad80e6a85f2 -Group inference 8 2 Parameters of the null distribution of the test statisic. Typically degrees of freedom (should be clear from the test statistic what these are). float group statistic parameters 1 group statistic parameters 1 1 30c1374b-3087-418e-8ba7-afc5c48f3c12 -Group inference 8 3 Noise smoothness for statistical inference This is the estimated smoothness used with Random Field Theory or a simulation-based inference method. float 0 group smoothness fwhm 1 group smoothness fwhm 1 1 9d9b6e18-4ea8-472e-a148-793749f6704a +Experimental design 1 1 Type of design select blocked | event_related | hybrid block/event type_of_design type of design 1 type of design 1 1 Describe your experimental design 63641e7c-5057-41a5-8416-d02720d8638a +Experimental design 1 2 Number of imaging runs acquired integer 0 number of imaging runs 1 number of imaging runs 1 2 ca415e75-ebf6-4308-a64c-c08e5be391fb +Experimental design 1 3 Number of blocks, trials or experimental units per imaging run integer 0 number of experimental units 1 number of experimental units 1 2 d7db9378-6f3c-49ed-89a4-8d1f35fd9d64 +Experimental design 1 4 Length of each imaging run seconds float 0 length of runs 1 length of runs 1 2 58276f0c-86f4-46ff-b344-ba6c835f1caa +Experimental design 1 5 For blocked designs, length of blocks seconds float 0 length of blocks type_of_design in [0, 2] length of blocks 1 2 5f5c2005-fd3f-45b0-b279-523f48754ad3 +Experimental design 1 6 Length of individual trials seconds float 0 length of trials 1 length of trials 1 2 8996a65e-95ed-4ae0-a733-7601330e8fed +Experimental design 1 7 Was the design optimized for efficiency? radio preset:boolean optimization 1 optimization 1 2 ca248dee-6260-4603-9c08-e83a96e08d5c +Experimental design 1 8 What method was used for optimization? textarea optimization method optimization == 1 optimization method 1 3 767b16f0-dd8c-4157-b4bf-a5945e82e0f7 +Participants 2 1 Number of subjects entering into the analysis integer 0 number of subjects 1 number of subjects 1 1 Describe your participant sample 587e3ed0-f836-4d22-a39f-7deb85e72805 +Participants 2 2 Mean age of subjects float 0 | 120 subject_age_mean subject age mean 1 subject age mean 1 1 1337d210-e353-441d-8f95-0180b87b82d5 +Participants 2 3 Minimum age of subjects float 0 | 120 subject_age_min subject age min 1 subject_age_min > subject_age_mean, minimum age must be less than mean age subject age min 1 2 945c4a8b-c94d-41ee-b9e9-0d7e485a24d8 +Participants 2 4 Maximum age of subjects float 0 | 120 subject_age_max subject age max 1 subject_age_max < subject_age_mean, maximum age must be more than mean age subject age max 1 2 aeb52c0c-30fd-4c96-a73d-e461441083cc +Participants 2 5 Handedness of subjects radio right | left | both handedness 1 handedness 1 2 a09b74e8-d97f-4a65-8877-dac82b63d3d4 +Participants 2 6 The proportion of subjects who were male float 0 | 1 proportion male subjects 1 proportion male subjects 1 2 d4892a05-ec21-479a-b607-8240af718741 +Participants 2 7 Additional inclusion/exclusion criteria, if any. Including specific sampling strategies that limit inclusion to a specific group, such as laboratory members. textarea inclusion exclusion criteria 1 inclusion exclusion criteria 1 3 8da76c58-4193-47f5-8561-472df29d17ef +Participants 2 8 Number of subjects scanned but rejected from analysis integer 0 number of rejected subjects 1 number of rejected subjects 1 2 1e7721f9-bcbc-4c80-a0e8-7f9b8bc1a9b7 +Participants 2 9 Was this study a comparison between subject groups? radio preset:boolean group comparison 1 group comparison 1 1 bf2c55da-9bcd-4377-b4d7-dfc186b05b60 +Participants 2 10 A description of the groups being compared textarea group description group_comparison == 1 group description 1 2 3b078faa-8beb-461a-bf9d-22bc5587e6ef +MRI acquisition 3 1 Manufacturer of MRI scanner select Siemens | Philips | General Electric | other Manufacturer scanner make 1 scanner make 1 1 Describe your acquisition parameters b1d22b77-08dd-45a1-a6af-eb1c4c48bcf9 +MRI acquisition 3 2 Model of MRI scanner textarea ManufacturersModelName scanner model 1 scanner model 1 1 2de17ee2-4802-494c-89f7-2167553c4cd0 +MRI acquisition 3 3 Field strength of MRI scanner Tesla float 0 | 20 MagneticFieldStrength field strength 1 field strength 1 1 fb30a284-d140-4fc3-95cb-d9434ff5922b +MRI acquisition 3 4 Description of pulse sequence used for fMRI select Gradient echo | Spin echo | Mutliband gradient echo | MPRAGE | MP2RAGE | FLASH | other PulseSequenceType pulse sequence 1 pulse sequence 1 1 eec98056-c87a-418a-9936-6aae8efae674 +MRI acquisition 3 5 Description of parallel imaging method and parameters textarea parallel imaging 1 parallel imaging 1 3 0ccb53cc-a475-4c34-aad2-869643f827e4 +MRI acquisition 3 6 Imaging field of view Millimeters float field of view 1 field of view 1 2 f0bff884-a4f1-4a1f-b229-b18700dd8e24 +MRI acquisition 3 7 Matrix size for MRI acquisition integer matrix size 1 matrix size 1 2 ad9baeb2-c968-4c58-bead-9bab3872bb51 +MRI acquisition 3 8 Distance between slices (includes skip or distance factor). Millimeters float 0 slice thickness 1 slice thickness 1 1 4f79afda-7864-4b4c-bce9-57422977d138 +MRI acquisition 3 9 The size of the skipped area between slices. Millimeters float 0 skip factor 1 skip factor 1 2 9f0e5b9a-e9b6-42de-9a6a-0667c1dee494 +MRI acquisition 3 10 The orientation of slices radio axial | sagittal | frontal acquisition orientation 1 acquisition orientation 1 2 4fe90a98-d69e-4464-b7d1-5b70fd38ef6e +MRI acquisition 3 11 Order of acquisition of slices select ascending | descending | interleaved SliceTiming order of acquisition 1 order of acquisition 1 3 3016a042-8aad-4c75-afca-265e16e35712 +MRI acquisition 3 12 Repetition time (TR) Milliseconds float 0 RepetitionTime repetition time 1 repetition time 1 1 4db1117c-2516-4424-bf10-6c58bc697429 +MRI acquisition 3 13 Echo time (TE) Milliseconds float 0 EchoTime echo time 1 echo time 1 1 f6613a20-a999-459a-a072-9be1d244b0b7 +MRI acquisition 3 14 Flip angle Degrees float 0 FlipAngle flip angle 1 flip angle 1 2 bb3d29ab-f601-499e-9d5b-8f5a1eed3668 +Preprocessing 4 1 If a single software package was used for all analyses, specify that here select preset:mri_softwares SoftwareName software package 1 software package 1 1 Describe your preprocessing 30d5df3a-a071-4738-94c6-b2ec46a24f89 +Preprocessing 4 2 Version of software package used textarea SoftwareVersion software version 1 software version 1 1 cbc81e0a-d910-4ba6-a1ed-52f3f7b3420d +Preprocessing 4 3 Specify order of preprocessing operations textarea order of preprocessing operations 1 order of preprocessing operations 1 2 27edc36e-e8d7-4fb4-bab2-0765a85ff17e +Preprocessing 4 4 Describe quality control measures textarea quality control 1 quality control 1 3 f98d8fc9-8439-437d-9164-5fa128f337da +Preprocessing 4 5 Was B0 distortion correction used? radio preset:boolean used b0 unwarping 1 used b0 unwarping 1 2 24ce6d9c-f479-49e2-ab74-5e5928fbe2fa +Preprocessing 4 6 Specify software used for distortion correction if different from the main package select preset:mri_softwares b0 unwarping software used_b0_unwarping == 1 b0 unwarping software 1 3 2912e5a9-68ff-4682-b3e1-5f9659e268ab +Preprocessing 4 7 Was slice timing correction used? radio preset:boolean used slice timing correction 1 used slice timing correction 1 1 33e0f649-e5aa-4f87-8e25-21b2e13c7368 +Preprocessing 4 8 Specify software used for slice timing correction if different from the main package select preset:mri_softwares slice timing correction software used_slice_timing_correction == 1 slice timing correction software 1 3 7022a0f7-ccd5-4f7a-8298-e32a33b4cf3f +Preprocessing 4 9 Was motion correction used? radio preset:boolean used motion correction 1 used motion correction 1 1 a0ee5d02-d4f6-4677-a7e3-b65b6bbf095c +Preprocessing 4 10 Specify software used for motion correction if different from the main package select preset:mri_softwares motion correction software used_motion_correction == 1 motion correction software 1 3 9f3ee6d8-f9aa-4bdd-8999-96f1af63f1c0 +Preprocessing 4 11 Reference scan used for motion correction textarea motion correction reference used_motion_correction == 1 motion correction reference 1 3 0a41af3a-261c-4bf2-8312-a564ec24eeba +Preprocessing 4 12 Similarity metric used for motion correction select preset:cost_functions motion correction metric used_motion_correction == 1 motion correction metric 1 3 0b8dcbbb-2a28-4e46-ab9b-76dd3d6b4be2 +Preprocessing 4 13 Interpolation method used for motion correction select preset:interpolations motion correction interpolation used_motion_correction == 1 motion correction interpolation 1 3 0f6eee8f-5e5c-403e-a87a-39c8fc89434a +Preprocessing 4 14 Was motion-susceptibility correction used? radio preset:boolean used motion susceptibiity correction 1 used motion susceptibiity correction 1 3 2cd47d1d-d69c-47af-a04e-3974bfedede0 +Intersubject registration 5 1 Were subjects registered to a common stereotactic space? radio preset:boolean used intersubject registration 1 used intersubject registration 1 1 Describe your spatial normalization e2b8583f-93e6-42c1-a855-23f931266500 +Intersubject registration 5 2 Specify software used for intersubject registration if different from main package select preset:mri_softwares intersubject registration software used_intersubject_registration == 1 intersubject registration software 1 2 c45f6d3a-ed4f-4ec7-a31d-4f0d820e4ba6 +Intersubject registration 5 3 Was linear or nonlinear registration used? select linear | non-linear intersubject transformation type used_intersubject_registration == 1 intersubject transformation type 1 1 d32f398d-ae34-4f00-a47c-9e889b3052f1 +Intersubject registration 5 4 If nonlinear registration was used, describe transform method textarea nonlinear transform type used_intersubject_registration == 1 and nonlinear_transform_type == 1 nonlinear transform type 1 2 cd44b89f-459b-4ea6-a564-edc3b2852eda +Intersubject registration 5 5 Similarity metric used for intersubject registration textarea transform similarity metric used_intersubject_registration == 1 transform similarity metric 1 3 1e9f8222-142f-463a-81f9-cd221d8ec140 +Intersubject registration 5 6 Interpolation method used for intersubject registration select preset:interpolations interpolation method used_intersubject_registration == 1 interpolation method 1 2 23ac1b7d-14cd-43c3-8e1d-aca6bf412122 +Intersubject registration 5 7 What type of image was used to determine the transformation to the atlas? textarea object image type used_intersubject_registration == 1 object image type 1 1 48b817ee-590c-4d55-a7cc-ba4896e9df5e +Intersubject registration 5 8 Were the functional images coregistered to the subject's structural image? radio preset:boolean functional coregistered to structural 1 functional coregistered to structural 1 2 1624ae52-2023-4327-b1a9-4555133df780 +Intersubject registration 5 9 Method used to coregister functional to structural images textarea functional coregistration method functional_coregistered_to_structural == 1 functional coregistration method 1 3 57536ec5-dc02-4d22-bcb7-3b89979743e0 +Intersubject registration 5 10 Name of coordinate space for registration target select MNI | Talairach | MNI2Tal | other coordinate space 1 coordinate space 1 1 0d1f1475-7bb5-445a-a5e1-7c83e5382be9 +Intersubject registration 5 11 Name of target template image textarea target template image 1 target template image 1 2 8cacbbc3-ed98-4f30-a0ba-f0028178db9c +Intersubject registration 5 12 Voxel size of target template Millimeters float 0 target resolution 1 target resolution 1 1 b86944db-58bd-43b2-8036-df2028540dea +Intersubject registration 5 13 Was spatial smoothing applied? radio preset:boolean used smoothing 1 used smoothing 1 1 3615f6ce-feb5-4de3-ab61-01bdbe19a094 +Intersubject registration 5 14 Describe the type of smoothing applied textarea smoothing type used_smoothing == 1 smoothing type 1 1 73c09e44-fa01-4e27-bf6a-11b274e49ce3 +Intersubject registration 5 15 The full-width at half-maximum of the smoothing kernel Millimeters float 0 smoothing fwhm used_smoothing == 1 smoothing fwhm 1 1 4bf501d5-d9a3-4b68-80d3-3bd6a93a396e +Intersubject registration 5 16 Voxel size in mm of the resampled, atlas-space images float 0 resampled voxel size 1 resampled voxel size 1 1 dfdd44d7-5afb-46eb-9e71-aecd7f505672 +Individual subject modeling 6 1 Type of group model used radio Regression | other intrasubject model type 1 intrasubject model type 1 1 Describe your model specification at the subejct level 2f484016-5a82-4657-b664-ff8122717997 +Individual subject modeling 6 2 Estimation method used for model select ordinary least squares | generalized least squares | other intrasubject estimation type 1 intrasubject estimation type 1 1 d00994ce-3367-4a60-ad47-46500a06a212 +Individual subject modeling 6 3 Software used for intrasubject modeling if different from overall package select preset:mri_softwares intrasubject modeling software 1 intrasubject modeling software 1 2 8066a4b3-f102-4e9c-918a-5b6973058999 +Individual subject modeling 6 4 Nature of HRF model select spm HRF | glover HRF | double gamma | Fourrier set | Finite Impulse Response | FLOBS | other hemodynamic response function 1 hemodynamic response function 1 2 0f98ca57-9a21-4663-bd8e-33d302f6596b +Individual subject modeling 6 5 Were temporal derivatives included? radio preset:boolean used temporal derivatives 1 used temporal derivatives 1 2 a5a43ae1-eeb6-452b-bc29-c1f70e5d93ee +Individual subject modeling 6 6 Were dispersion derivatives included? radio preset:boolean used dispersion derivatives 1 used dispersion derivatives 1 3 aaf2c06f-6dcb-4023-9165-93746204f575 +Individual subject modeling 6 7 Were motion regressors included? radio preset:boolean used motion regressors 1 used motion regressors 1 2 e8a664a1-f368-4ea4-8fb9-38a1fda51cc7 +Individual subject modeling 6 8 Was a reaction time regressor included? radio preset:boolean used reaction time regressor 1 used reaction time regressor 1 2 24c6bc1c-c8d8-45c2-9b85-bffa0023bc92 +Individual subject modeling 6 9 Were any regressors specifically orthogonalized with respect to others? radio preset:boolean used orthogonalization 1 used orthogonalization 1 1 eb7c5de4-2733-4efd-be02-72b59d606085 +Individual subject modeling 6 10 If orthogonalization was used, describe here textarea orthogonalization description used_orthogonalization == 1 orthogonalization description 1 2 801b30cf-4afd-4312-a5c6-cb054ae1a397 +Individual subject modeling 6 11 Was high pass filtering applied? radio preset:boolean used high pass filter 1 used high pass filter 1 1 56a34132-a944-48e4-a218-ee48438c4b5b +Individual subject modeling 6 12 Describe method used for high pass filtering textarea high pass filter method used_high_pass_filter == 1 high pass filter method 1 2 45a297c4-f0aa-4d66-9e62-c3493789ab5c +Individual subject modeling 6 13 What autocorrelation model was used ? select SPM: global approximate AR(1) | SPM: FAST | FSL: locally regularized autocorrelation function | AFNI: ARMA | none | other autocorrelation model 1 autocorrelation model 1 2 2b2e420a-60a0-4b0b-8ff2-8b9062c39902 +Individual subject modeling 6 14 Exactly what terms are subtracted from what? textarea contrast definition 1 contrast definition 1 1 513fe53f-74f2-456d-9384-f14b75a48eb1 +Individual subject modeling 6 15 Link to Cognitive Atlas definition of this contrast Define these in terms of task or stimulus conditions (for example 'one-back task with objects versus zero-back task with objects') instead of underlying psychological concepts (for example 'working memory'). textarea contrast definition cogatlas 1 contrast definition cogatlas 1 3 d28f51c8-009c-4525-9138-a2c33a5dbb35 +Group modeling 7 1 Type of group model used select Regression group model type 1 group model type 1 1 Describe the group level analysis fe8c6f47-cbbc-44cb-9b20-900541e15866 +Group modeling 7 2 Estimation method used for model select ordinary least squares | generalized least squares | other group estimation type 1 group estimation type 1 1 3ebb5160-2e91-48e8-9e2c-4be418bac6c4 +Group modeling 7 3 Software used for group modeling if different from overall package select preset:mri_softwares group modeling software 1 group modeling software 1 2 21918c04-d6e3-49b1-9fe5-15ab89460756 +Group modeling 7 4 Type of inference for group model select random effect | mixed effect | fixed effect group inference type 1 group inference type 1 1 b9c89f92-05b7-4bed-b62e-63ada7fa4267 +Group modeling 7 5 If more than 2-levels, describe the levels and assumptions of the model. For example, are variances assumed equal between groups. textarea group model multilevel 1 group model multilevel 1 3 74544069-71fb-45fa-9c2f-1ade5efd3227 +Group modeling 7 6 Was this a repeated measures design at the group level? radio preset:boolean group repeated measures 1 group repeated measures 1 1 261dd74d-6987-4b19-a462-7fd06b8a0341 +Group modeling 7 7 If multiple measurements per subject, list method to account for within subject correlation, exact assumptions made about correlation/variance textarea group repeated measures method group_repeated_measures == 1 group repeated measures method 1 3 532457ec-d941-4ba4-b9a6-1330d706d0ab +Group inference 8 1 Type of statistic that is the basis of the inference select Z | T | F | X2 | PostProb | Non-parametric Permutations | Monte Carlo Permutations | other group statistic type 1 group statistic type 1 2 Describe your statistical inference ba00a6ef-00d5-45c8-bae9-ee269eacff4a +Group inference 8 2 Parameters of the null distribution of the test statisic. Typically degrees of freedom (should be clear from the test statistic what these are). float group statistic parameters 1 group statistic parameters 1 1 117155a0-9ca4-4904-b736-02a5dd5b9205 +Group inference 8 3 Noise smoothness for statistical inference This is the estimated smoothness used with Random Field Theory or a simulation-based inference method. float 0 group smoothness fwhm 1 group smoothness fwhm 1 1 51512ef4-6765-46c7-a17b-e17d1d4d9933